View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9293_low_25 (Length: 242)
Name: NF9293_low_25
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 25614145 - 25614096
Alignment:
| Q |
174 |
aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25614145 |
aaagtggagtctacaaacccttctgatgaaaagaacttgaagctttgggc |
25614096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 25614188 - 25614136
Alignment:
| Q |
107 |
ccattgagataaaatgaaaattagagatcaagaatgttgttcaaaagtggagt |
159 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25614188 |
ccattgagataaaatgaaaattagaggtcaagaatgttgttcaaaagtggagt |
25614136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25614294 - 25614248
Alignment:
| Q |
1 |
ttgggcatttccattccatgggtagactccaattccactgtaagagg |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25614294 |
ttgggcatttccattccatgggtagactccaattccactgtaagagg |
25614248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 31262284 - 31262239
Alignment:
| Q |
178 |
tggagtctacaaacccttctgatgaaaagaacttgaagctttgggc |
223 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
31262284 |
tggagtctacaaacccttctcacaaaaagaacttgaagctttgggc |
31262239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University