View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_28 (Length: 226)
Name: NF9293_low_28
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 24634300 - 24634497
Alignment:
| Q |
20 |
caaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24634300 |
caaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaata |
24634399 |
T |
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| Q |
120 |
cagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactccaaactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24634400 |
cagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactccaaactc |
24634497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 24679971 - 24680164
Alignment:
| Q |
20 |
caaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaata |
119 |
Q |
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||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
24679971 |
caaagaagtgtctcacaaccaactaaaccggaaaagtggaatatgatcatagtagttggcaagctcatgtcagccatggttgcaactacatgacaaaata |
24680070 |
T |
|
| Q |
120 |
cagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactccaa |
213 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
24680071 |
cagaagtaagaaacaggaaacaaataggggaagattgttggaaagggttggtatctgaaccttgatacataattccaattgagctcaactccaa |
24680164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 24656404 - 24656594
Alignment:
| Q |
20 |
caaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
24656404 |
caaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaaatc |
24656503 |
T |
|
| Q |
120 |
cagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactc |
210 |
Q |
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|| ||| |||||||| || || |||||| |||||||||| |||||| | ||| ||||||| ||| | | |||||||||||||||||| |
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| T |
24656504 |
tagcagtcaaaaacagcaacataagtggggataattgttggaaggggttggtgtttaaaccttggtactttactccaattgaacccaactc |
24656594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 24672780 - 24672959
Alignment:
| Q |
23 |
agaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacag |
122 |
Q |
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||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| || |
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| T |
24672780 |
agaagtgtctcacatccaactaaaccggaaaagtggaatatgatcatagtagttggcgagctcatgtcagcgatggttgcaacgacatgacaaaatagag |
24672879 |
T |
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| Q |
123 |
aagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaa |
202 |
Q |
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||| |||||||| || || || ||| ||||||||||| |||||| | ||| ||||||||||| |||||||||||||| |
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| T |
24672880 |
cagttaaaaacagcaacataagtgaggatgattgttggaaggggttggtgtttaaaccttgatacttaattccaattgaa |
24672959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 24687576 - 24687761
Alignment:
| Q |
25 |
aagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaa |
124 |
Q |
| |
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||||||||||||| ||| || || |||||||||||||||||||||||| |||||||| ||| |||||| ||| || ||| |||||||||| | ||| |
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| T |
24687576 |
aagtgtctcacatgcaacaatcccggaaaagtggaatatgatcatagtacttggtaaggtcaagtcagctgtggatgaaacgacatgacaaaagatagat |
24687675 |
T |
|
| Q |
125 |
gtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactc |
210 |
Q |
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|| ||||| || || | || ||| ||||||||||| || || | ||| ||||||||||| |||||||||| ||||||||||| |
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| T |
24687676 |
gtcaaaaatagcaacaaggtttggggtgattgttggaagggattagtgtttaaaccttgatacttaattccaatcgaacccaactc |
24687761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 24677018 - 24677121
Alignment:
| Q |
110 |
tgacaaaatacagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaact |
209 |
Q |
| |
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|||||||||| ||| | ||||||| |||| |||||||||||| ||||||||| |||||| | |||||||||||| || |||| ||||| ||| |||||| |
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| T |
24677018 |
tgacaaaatagagatgccaaaaacatgaaaaaaattggggaaggttgttggaatgggttggtgtttgaaccttgacacttaataccaatggaagccaact |
24677117 |
T |
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| Q |
210 |
ccaa |
213 |
Q |
| |
|
|||| |
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|
| T |
24677118 |
ccaa |
24677121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 24693242 - 24693352
Alignment:
| Q |
25 |
aagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaa |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || || ||||||| ||| |||||||| ||||| ||| || |||||| |||||| ||| ||| |
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| T |
24693242 |
aagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgcgtgacaacatagagat |
24693341 |
T |
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| Q |
125 |
gtaaaaaacag |
135 |
Q |
| |
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|| |||||||| |
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| T |
24693342 |
gtcaaaaacag |
24693352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 24648683 - 24648750
Alignment:
| Q |
68 |
atagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaagtaaaaaacag |
135 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| ||||| ||| || |||||||| |
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| T |
24648683 |
atagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacag |
24648750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 24641873 - 24641983
Alignment:
| Q |
25 |
aagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaa |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || || ||||||| || |||||||| ||||| ||| || |||||| |||||| ||| ||| |
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| T |
24641873 |
aagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagat |
24641972 |
T |
|
| Q |
125 |
gtaaaaaacag |
135 |
Q |
| |
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|| |||||||| |
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| T |
24641973 |
gtcaaaaacag |
24641983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24684633 - 24684683
Alignment:
| Q |
20 |
caaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcata |
70 |
Q |
| |
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|||||||||||||||| ||||| | ||| ||||||||||||||||||||| |
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|
| T |
24684633 |
caaagaagtgtctcacgtccaactaaaccggaaaagtggaatatgatcata |
24684683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 24676928 - 24676972
Alignment:
| Q |
32 |
tcacatccaataacaccagaaaagtggaatatgatcatagtagtt |
76 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || ||||||||| |
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| T |
24676928 |
tcacatccaacaataccagaaaagtggaatattataatagtagtt |
24676972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 14722813 - 14722765
Alignment:
| Q |
30 |
tctcacatccaataacaccagaaaagtggaatatgatcatagtagttgg |
78 |
Q |
| |
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|||||||||||| | |||||||||||||||||| ||| |||||||||| |
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| T |
14722813 |
tctcacatccaacatcaccagaaaagtggaatacgattctagtagttgg |
14722765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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