View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9293_low_3 (Length: 464)

Name: NF9293_low_3
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9293_low_3
NF9293_low_3
[»] chr4 (1 HSPs)
chr4 (1-449)||(40446372-40446820)
[»] chr5 (2 HSPs)
chr5 (94-142)||(34382545-34382593)
chr5 (92-142)||(22579676-22579726)
[»] chr6 (1 HSPs)
chr6 (93-144)||(2133323-2133374)
[»] chr1 (2 HSPs)
chr1 (20-89)||(37073723-37073790)
chr1 (92-142)||(45141369-45141419)
[»] chr7 (3 HSPs)
chr7 (93-142)||(27334375-27334424)
chr7 (20-48)||(4958339-4958367)
chr7 (71-130)||(48615335-48615397)
[»] chr2 (1 HSPs)
chr2 (20-88)||(4755304-4755370)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 40446372 - 40446820
Alignment:
Q  1 tacaaatatctt-ttaataatttttaatagtagtatctaataaacactcgatttttatgcaactcaacacttcacacgaatttcttaaacattcattaat 99  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40446372 tacaaatatcttgttaataatttttaatagtagtatctaataaacactcgatttttatgcaactcaacacttcacacgaatttcttaaacattcattaat 40446471  T
Q  100 catctatcaatagctttataggattacattttaatattttaatctataata---gtgaaactcacataaagagagatgatatttatttgagacgctcttc 196  Q
    ||||||||| || |||||||  ||||||||||||||||||||||||||| |   ||||||||||||||    || |||||| |||||||||||||||||     
T  40446472 catctatcactaactttatacaattacattttaatattttaatctataaaaagagtgaaactcacata----gaaatgatacttatttgagacgctctta 40446567  T
Q  197 tgtttacgtatccatcttcttttcttcacaatgaaaatatctattagatatcgatattaatggagttaggatcttctattgtggatggtcttactacatc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  40446568 tgtttacgtatccatcttcttttcttcacaatgaaaatatctattagatatcgatattaatggagttaggatcttccatcgtggatggtcttactacatc 40446667  T
Q  297 catattgtgtaataaaatatgcggctattaatgtgcatcgatcggctcctcctcaaggcatgaactggtccaaccaagttcactgcgtgtacatgatttc 396  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40446668 catattgtgtaataaagtatgcggctattaatgtgcatcgatcggctcctcctcaaggtatgaactggtccaaccaagttcactgcgtgtacatgatttc 40446767  T
Q  397 ctcttcccacgtcgcaacttatcactgaattcatgatctcatcttacacacac 449  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40446768 ctcttcccacgtcgcaacttatcactgaattcataatctcatcttacacacac 40446820  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 34382545 - 34382593
Alignment:
Q  94 attaatcatctatcaatagctttataggattacattttaatattttaat 142  Q
    ||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  34382545 attaatcatctatcaataattttatatcattacattttaatattttaat 34382593  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 22579726 - 22579676
Alignment:
Q  92 tcattaatcatctatcaatagctttataggattacattttaatattttaat 142  Q
    |||||||| ||||||||||| |||||||  ||||||||||||| |||||||    
T  22579726 tcattaattatctatcaataactttatataattacattttaattttttaat 22579676  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 2133323 - 2133374
Alignment:
Q  93 cattaatcatctatcaatagctttataggattacattttaatattttaatct 144  Q
    ||||||| ||||||||||| || ||||  |||||||||||||||||||||||    
T  2133323 cattaattatctatcaataactctatatcattacattttaatattttaatct 2133374  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 37073790 - 37073723
Alignment:
Q  20 tttttaatagtagtatctaataaacactcgatttttatgcaactcaacacttcacacgaatttcttaaac 89  Q
    ||||||||| ||||||||||||||||||| |  ||| |||||| |||||| |||||| ||| ||||||||    
T  37073790 tttttaatactagtatctaataaacactcaa--tttctgcaacccaacacctcacacaaatatcttaaac 37073723  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 45141369 - 45141419
Alignment:
Q  92 tcattaatcatctatcaatagctttataggattacattttaatattttaat 142  Q
    |||||||||||| ||||||| ||||| |  |||||||||||||||||||||    
T  45141369 tcattaatcatcaatcaataactttacataattacattttaatattttaat 45141419  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 27334424 - 27334375
Alignment:
Q  93 cattaatcatctatcaatagctttataggattacattttaatattttaat 142  Q
    ||||||||||||||||||| || ||||  ||||||||| |||||||||||    
T  27334424 cattaatcatctatcaataactctatatcattacatttcaatattttaat 27334375  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 4958367 - 4958339
Alignment:
Q  20 tttttaatagtagtatctaataaacactc 48  Q
    |||||||||||||||||||||||||||||    
T  4958367 tttttaatagtagtatctaataaacactc 4958339  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 48615335 - 48615397
Alignment:
Q  71 tcacacgaatttcttaaac---attcattaatcatctatcaatagctttataggattacattt 130  Q
    |||||| ||||||||||||   || ||||||||||||||||||| |||||||  |||||||||    
T  48615335 tcacacaaatttcttaaacggaatccattaatcatctatcaataactttatatcattacattt 48615397  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4755304 - 4755370
Alignment:
Q  20 tttttaatagtagtatctaataaacactcgatttttatgcaactcaacacttcacacgaatttcttaaa 88  Q
    ||||||||| || ||||||||||| |||| ||||||   ||||||||||| |||||| |||||||||||    
T  4755304 tttttaatattattatctaataaatactcaatttttc--caactcaacacctcacacaaatttcttaaa 4755370  T

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