View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_4 (Length: 458)
Name: NF9293_low_4
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 46018043 - 46018485
Alignment:
| Q |
1 |
atttgcatttacttgttccaacgtgtaacttccaaatagaccaacccgtgatacctcttctccagaaaagtatggcgacgacatttctcccaaggctgcc |
100 |
Q |
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| T |
46018043 |
atttgcatttacttgttccaacgtgtaacttccaaatagaccaacccgtgatacctcttctccagaaaagtatggcgacgacatttctcccaaggctgcc |
46018142 |
T |
|
| Q |
101 |
atttgatcacaaaattcagaaccaacaaggctactttgtgagattgaggtagtcggccacatttctggttggcacggaaatggcaggtcaaagcttgtag |
200 |
Q |
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| T |
46018143 |
atttgatcacaaaattcagaaccaacaaggccactttgtgagattgaggtagtcggccacatttctggttggcacggaaatggcaggtcaaagcttgtag |
46018242 |
T |
|
| Q |
201 |
aataagcactcaacaggcctgaaggatagaattaggatatcagcaacaaaaagtgaaaataaaaagttttgaaacatagttatataccctcttcaagact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46018243 |
aataagcactcaacaggcctgaaggatagaattaggatatcagcaacaaaaagtgaaaataaaaagttttgaaacatagttatataccctcttcaagact |
46018342 |
T |
|
| Q |
301 |
catcgcctagacaactcaagactttttcagttttgaaatgcatccaaaagtgtttatgcagaatataagtgtacatatagagtaccttgctgagcaattg |
400 |
Q |
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| T |
46018343 |
catcgcctagacaactcaagactttttcagttttgaaatgcatccaaaagtgtttatgcagaatataagtgtacatatagagtaccttgctgagcaattg |
46018442 |
T |
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| Q |
401 |
gaaagtcaaacggttgccgggcttgatcttgaccaccatattg |
443 |
Q |
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| T |
46018443 |
gaaagtcaaacggttgccgggcttgatcttgaccaccatattg |
46018485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 248 - 443
Target Start/End: Original strand, 46030914 - 46031118
Alignment:
| Q |
248 |
aaaaagtgaaaataaaaagttttgaaacatagtta-tataccctcttcaagactcatcgcctagac-aactcaagactttttcagttttgaaatgcatcc |
345 |
Q |
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||||| ||||||| | |||||| |||| |||||| |||||||||||||||||||| | |||| || |||| ||||||||||||||||||||||||||| |
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| T |
46030914 |
aaaaattgaaaattagtagtttttaaacgtagttaatataccctcttcaagactcaacacctataccaacttgagactttttcagttttgaaatgcatcc |
46031013 |
T |
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| Q |
346 |
aaaagtgtttatgcagaatataagtgtaca-------tatagagtaccttgctgagcaattggaaagtcaaacggttgccgggcttgatcttgaccacca |
438 |
Q |
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||||| ||||||||||||||||||||| | |||||||||||||||||| || | |||||||| || ||||| |||||||||||||||| || |
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| T |
46031014 |
aaaaggttttatgcagaatataagtgtatatataaattatagagtaccttgctgacaaactagaaagtcagactgttgcagggcttgatcttgaccgtca |
46031113 |
T |
|
| Q |
439 |
tattg |
443 |
Q |
| |
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||||| |
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|
| T |
46031114 |
tattg |
46031118 |
T |
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