View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9293_low_5 (Length: 430)
Name: NF9293_low_5
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 29299092 - 29299501
Alignment:
| Q |
8 |
tagcataggctttaaattgatctcctccatacatagcacagataccaatcgcccgtgtagcatgctggaataatcattacccaaaaactaatgttcatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29299092 |
tagcataggctttaaattgatctcctccatacatagcacagataccaatcgcccgtgtagcatgctggaataatcattacccaaaaactaatgttcatta |
29299191 |
T |
|
| Q |
108 |
ccctccatcttatatagaaataagtaaagaaacaaaattagtcacacatatttgaaaataccagctcagaacaaggataacctctccttaaagcaaaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29299192 |
ccctccatcttatatagaaataagtaaagaaacaaaattagtcacacatatttgaaaataccagctcagaacaaggataacctctccttaaagcaaaaca |
29299291 |
T |
|
| Q |
208 |
ggaggctacaatatatctgtcatgatacctgttcaaatagcacacaggaacaagacgtattagtaattgaggcatttaatattgctacatctaaaattat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29299292 |
ggaggctacaatatatctgtcatgatacctgttcaaatagcacacaggaacaagacgtattagtaattgaggcatttaatattgctacatctaaaattat |
29299391 |
T |
|
| Q |
308 |
tgctacaagatgtatccaataattttttatgtttggaaggnnnnnnntattgctacaactaaacgataaaagaaactagatttacggtggcaatttgtct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29299392 |
tgctacaagatgtatccaataattttttatgtttggaaggaaaaaaatattgctacaactaaacaataaaagaaactagatttacggtggcaatttgtct |
29299491 |
T |
|
| Q |
408 |
gggaatagtg |
417 |
Q |
| |
|
|||||||||| |
|
|
| T |
29299492 |
gggaatagtg |
29299501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 29317043 - 29317453
Alignment:
| Q |
6 |
agtagcataggctttaaattgatctcctccatacatagcacagataccaatcgcccgtgtagcatgctggaataatcattacccaaaaactaatgttcat |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
29317043 |
agtagcagaggctttaaattgatctcctccaaacatagcacagataccaatcgcccttgtagcatgctgtaataatcattacccaaaaagtaatgttca- |
29317141 |
T |
|
| Q |
106 |
taccctccatcttatatagaaataagtaaagaaacaaaattagtca-cacatatttgaaaataccagctcagaacaaggataacctctccttaaagcaaa |
204 |
Q |
| |
|
| | ||||||||| | ||||||||||| |||| | || ||||||||| |||||||||| | |||| |||||| ||||||||||||||| |
|
|
| T |
29317142 |
---catt--tcttatata---acaagtaaagaaaaaaaaattatcggcacatatttaaaaataccagtttggaactaggatagtttctccttaaagcaaa |
29317233 |
T |
|
| Q |
205 |
acaggaggctacaatatatctgtcatgatacctgttcaaatagcacacaggaacaagacgtattagtaattgaggcatt--taatattgctacatctaaa |
302 |
Q |
| |
|
|||||| |||| || |||||||||| |||||||||||||||| ||||||| ||||||| ||| ||||||||| ||| | || |||||||||||||| |
|
|
| T |
29317234 |
acaggaagctaaaaaatatctgtcaagatacctgttcaaataacacacagaaacaagatatat---taattgaggtatttgttattttgctacatctaaa |
29317330 |
T |
|
| Q |
303 |
attattgctacaagatgtatccaataattttttatgtttggaaggnnnnnnntatt--------gctacaactaaacgataaaagaaactagatttacgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
29317331 |
attattgctacaagatgtatccaataattttttatgttcggaagaaaacaaatattactacaagtctacaactaaacgataaaagaaactagatttacag |
29317430 |
T |
|
| Q |
395 |
tggcaatttgtctgggaatagtg |
417 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
29317431 |
tggtaatttgtctgggaatagtg |
29317453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 29327663 - 29327908
Alignment:
| Q |
8 |
tagcataggctttaaattgatctcctccatacatagcacagataccaatcgcccgtgtagcatgctggaataatcattacccaaaaactaatgttcatta |
107 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29327663 |
tagcatagaatttaaattgatttcctccatacatagcacagataccaaacgcccgtgtagcatgctggaataatcattaccc-aaaattaatgttcatt- |
29327760 |
T |
|
| Q |
108 |
ccctccatcttatatagaaataagtaaagaaacaaaattagtcacacatatttgaaaataccagctcagaacaaggataacctctccttaaagcaaaaca |
207 |
Q |
| |
|
|||| ||||| |||| |||||||||| |||||| | |||| |||||||| |||||||| | |||||||||| | || |||| || ||| |
|
|
| T |
29327761 |
-tttcca----atatataaattagtaaagaaattaaattattgacac--atttgaaattaccagctgcgcacaaggataatttttctctaaaacatgaca |
29327853 |
T |
|
| Q |
208 |
ggaggctacaatatatctgtcatgatacctgttcaaatagcacacaggaacaaga |
262 |
Q |
| |
|
||||| | ||||||| ||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
29327854 |
ggaggtaaaaatatatttgttatgatacctgttcaaatagcacatagggacaaga |
29327908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 29289378 - 29289415
Alignment:
| Q |
49 |
ataccaatcgcccgtgtagcatgctggaataatcatta |
86 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29289378 |
ataccaatcgcccgtgtagcatgctggaagaatcatta |
29289415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 29327959 - 29328004
Alignment:
| Q |
372 |
gataaaagaaactagatttacggtggcaatttgtctgggaatagtg |
417 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
29327959 |
gataaaataaactagatttacggcggcaatttgtctgggtatagtg |
29328004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 42285458 - 42285402
Alignment:
| Q |
16 |
gctttaaattgatctcctccatacatagcacagataccaatcgcccgtgtagcatgc |
72 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42285458 |
gctttaaattgatctcctccaaacatagcacagataccaatcgcccatgtagcatgc |
42285402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University