View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9293_low_8 (Length: 407)

Name: NF9293_low_8
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9293_low_8
NF9293_low_8
[»] chr2 (8 HSPs)
chr2 (19-401)||(23864383-23864756)
chr2 (118-276)||(22788500-22788661)
chr2 (133-262)||(20571179-20571305)
chr2 (189-268)||(23757196-23757275)
chr2 (154-262)||(22626052-22626157)
chr2 (189-262)||(23756217-23756290)
chr2 (195-257)||(23840588-23840650)
chr2 (189-225)||(22723447-22723483)
[»] chr6 (3 HSPs)
chr6 (118-276)||(25779312-25779473)
chr6 (193-253)||(25741726-25741786)
chr6 (193-253)||(25747637-25747697)
[»] scaffold0624 (1 HSPs)
scaffold0624 (189-231)||(3822-3864)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 23864383 - 23864756
Alignment:
Q  19 actatgttgtatatatacgcaataatccgcacaaaaggtggtatacacactatcttatgatnnnnnnncaaaataggaggtataccaatagtcataatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  23864383 actatgttgtatatatacgcaataatccgcacaaaaggtggtatacacactatcttatgataaaaaaacaaaataggaggtataccaatagtcataatta 23864482  T
Q  119 aaaaggctggaaaaatgtctcattatctgtccgttctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatcaaat 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864483 aaaaggctgaaaaaatgtctcattatctgtccgttctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatcaaat 23864582  T
Q  219 acatgcgcaacccgatggaccgatcatttaccagccaccaacaattcatcaagaaacagttggtggtctcaactacggaccaccttttgatatcattcct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864583 acatgcgcaacccgatggaccgatcatttaccagccaccaacaattcatcaagaaacagttggtggtctcaactacggaccaccttttgatatcattcct 23864682  T
Q  319 aaacacagaaagctagcgaaattaccatctgcacctccacctcctcttttcgttcctgctattatcatcccaggaacaccaaa 401  Q
    |||||||||||||||||||||||||||         |||||||||||||| |||||| |||||||||||||||||||||||||    
T  23864683 aaacacagaaagctagcgaaattacca---------ccacctcctcttttggttcctactattatcatcccaggaacaccaaa 23864756  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 22788500 - 22788661
Alignment:
Q  118 aaaaaggctggaaaaatgtctcattatc---tgtccgttctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatc 214  Q
    ||||||||||||||||||||| |||||    | |||||  ||||||||||||||||||||| ||||||||||  |||||||||||||| ||||||||| |    
T  22788500 aaaaaggctggaaaaatgtcttattataacttatccgtgttagttttgtttcttgcagttaacactatcatcaccaatattgcaggaaatccaaagcacc 22788599  T
Q  215 aaatacatgcgcaacccgatggaccgatcatttaccagccaccaacaattcatcaagaaaca 276  Q
    ||||||| |||||||||| ||| ||||||||| ||| | ||||||||||| ||| |||||||    
T  22788600 aaatacacgcgcaacccgttgggccgatcattaaccggtcaccaacaattgatccagaaaca 22788661  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 20571305 - 20571179
Alignment:
Q  133 atgtctcattatctgtccgttctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatcaaatacatgcgcaacccg 232  Q
    ||||||||| || | ||||| |||||||||||||||||| |||||||| | | |   ||||||||||| | ||||||||||||||||||||| ||| |||    
T  20571305 atgtctcatcatttatccgtgctagttttgtttcttgcaattatcactcttacc---aatattgcagggaatccaaagcatcaaatacatgcccaaaccg 20571209  T
Q  233 atggaccgatcatttaccagccaccaacaa 262  Q
    ||||||||||||||||||||||||||||||    
T  20571208 atggaccgatcatttaccagccaccaacaa 20571179  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 23757196 - 23757275
Alignment:
Q  189 caatattgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagccaccaacaattcatc 268  Q
    |||||||||||| | ||||||  ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  23757196 caatattgcagggaatccaaattatcaaatacatgcccaaaccgatggaccgatcatttaccagccaccaacaactcatc 23757275  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 22626052 - 22626157
Alignment:
Q  154 ctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagc 253  Q
    |||||||||||||||||| |||| ||| | | ||  ||||||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||| |||||||    
T  22626052 ctagttttgtttcttgcaattattactctta-ct--aatattgcaggaaatccaaagtatcaaatacatgcccaaaccgatggaccaatcatctaccagc 22626148  T
Q  254 caccaacaa 262  Q
     ||||||||    
T  22626149 aaccaacaa 22626157  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 23756217 - 23756290
Alignment:
Q  189 caatattgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagccaccaacaa 262  Q
    |||||||||||| | |||||||  |||||||||||| | | ||||||||||||| |||||||||||||| ||||    
T  23756217 caatattgcagggaatccaaagtgtcaaatacatgctccaaccgatggaccgattatttaccagccacctacaa 23756290  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 23840650 - 23840588
Alignment:
Q  195 tgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagccacc 257  Q
    |||||| | |||||||||||||  ||||||||||||| |||| | ||||| ||||||||||||    
T  23840650 tgcagggaatccaaagcatcaacgacatgcgcaacccaatggtctgatcagttaccagccacc 23840588  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 22723447 - 22723483
Alignment:
Q  189 caatattgcaggaagtccaaagcatcaaatacatgcg 225  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  22723447 caatattacaggaaatccaaagcatcaaatacatgcg 22723483  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 25779473 - 25779312
Alignment:
Q  118 aaaaaggctggaaaaatgtctcattatc---tgtccgttctagttttgtttcttgcagttatcactatcatcttcaatattgcaggaagtccaaagcatc 214  Q
    ||||||||||||||||||||| |||||    | |||||  ||||||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||    
T  25779473 aaaaaggctggaaaaatgtcttattataacttatccgtgttagttttgtttcttgcagttaacactatcatcaccaatattgcaggaaatccaaagcatc 25779374  T
Q  215 aaatacatgcgcaacccgatggaccgatcatttaccagccaccaacaattcatcaagaaaca 276  Q
    ||||||| |||||||||| ||| ||||||||| ||| | ||||||||||| ||| |||||||    
T  25779373 aaatacacgcgcaacccgttgggccgatcattaaccggtcaccaacaattgatccagaaaca 25779312  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 25741726 - 25741786
Alignment:
Q  193 attgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagc 253  Q
    |||||||||| |||||| |||||||| ||||| ||||| ||||| ||||||||||||||||    
T  25741726 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagc 25741786  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 25747637 - 25747697
Alignment:
Q  193 attgcaggaagtccaaagcatcaaatacatgcgcaacccgatggaccgatcatttaccagc 253  Q
    |||||||||| |||||| |||||||| ||||| ||||| ||||| ||||||||||||||||    
T  25747637 attgcaggaaatccaaaccatcaaatgcatgctcaacctgatgggccgatcatttaccagc 25747697  T

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Target: scaffold0624 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 3822 - 3864
Alignment:
Q  189 caatattgcaggaagtccaaagcatcaaatacatgcgcaaccc 231  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  3822 caatattacaggaaatccaaagcatcaaatacatgcgcaaccc 3864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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