View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_9 (Length: 400)
Name: NF9293_low_9
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7352373 - 7352594
Alignment:
| Q |
1 |
ccagataagtgttaatg-ttatttattgggttttacaacaaatgaactcaattcatcaatttttaaaagtttttatgtgtcgtggactacagaaactgtc |
99 |
Q |
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| T |
7352373 |
ccagataagtgttcatggttatttgttgggttttacagcaaatgaactcaattcatcaatttttagaagtttttatgtgtcgtggactacagaaattgtc |
7352472 |
T |
|
| Q |
100 |
ggtgcaacctcaaccacacaaaatcacctgtaacgacgcttaactgtcgttggcacctacgacaattaactgtcattgcgttatggtaacaggagcaaaa |
199 |
Q |
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| T |
7352473 |
ggtgcaacctcaaccacacaaaatcacatgtaacgacgcttaactgtcattggcacctacgacaattaactatcgttgcgttatggtaacaagggcaaaa |
7352572 |
T |
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| Q |
200 |
cctgagtttacaaaaagtcatg |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
7352573 |
cctgagtttacaaaaagtcatg |
7352594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 7352657 - 7352756
Alignment:
| Q |
284 |
tgtgaaagtttatgttgattatcagaatttaaatataaaattgggaatagatgcatcatgcatatatcagctttctacatgtgtcaagacttatcagtgt |
383 |
Q |
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| T |
7352657 |
tgtgaaagtttatgttgattatcagaatttaaatataaaattgggaatagatgcatcatgcatatatcagctttctacaagtgttaagactaatcagtgt |
7352756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 26255615 - 26255662
Alignment:
| Q |
56 |
caatttttaaaagtttttatgtgtcgtggactacagaaactgtcggtg |
103 |
Q |
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| T |
26255615 |
caatttataaaagattttgtgtgtcgtggactacagaaactatcggtg |
26255662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 27842720 - 27842604
Alignment:
| Q |
3 |
agataagtgttaatg-ttatttattgggttttacaacaaatgaactcaattcatcaatttttaaaagtttttatgtgtcgtggactacagaaactgtcgg |
101 |
Q |
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| T |
27842720 |
agataagtgttcatggttctttgttgtgttttacaacaaatgaa-tcaa-acatcaatttatacaagtttatgtgcgtcgtggaccacataatttgtcgt |
27842623 |
T |
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| Q |
102 |
tgcaacctcaaccacacaa |
120 |
Q |
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|||||||| |||||||||| |
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| T |
27842622 |
tgcaacctgaaccacacaa |
27842604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 44539319 - 44539279
Alignment:
| Q |
284 |
tgtgaaagtttatgttgattatcagaatttaaatataaaat |
324 |
Q |
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| T |
44539319 |
tgtgaaagttgatgttgattaccagaatttaaagataaaat |
44539279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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