View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9294_2 (Length: 434)
Name: NF9294_2
Description: NF9294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9294_2 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 380
Target Start/End: Original strand, 771242 - 771592
Alignment:
| Q |
32 |
aataactcttaaattaaatacatattgaagtgggaaaataatctcttcttgaaaagaaggccagagcttttggacaccacatgctcttcagtaaccttgt |
131 |
Q |
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| T |
771242 |
aataactcttaaattaaatacatactgatgtgggaaaataatctcttcttgaaaagaaggccagagcttttggacaccacatgctcttctggaactttgt |
771341 |
T |
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| Q |
132 |
cggaaactgacaaa-gaacgcacatnnnnnnntgtcaaaatttgtaaacaagttagaaaagaacacataaactctcttatgttagtatgccttttagcaa |
230 |
Q |
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| T |
771342 |
cgtaaacagacaaaagaacaagcataaaaaaatgtcaaaatttgaaagcaagttagagaagaacacataaactctcttatgttagtatgccttttagcaa |
771441 |
T |
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| Q |
231 |
gagttacttaattgtaattggttgactgtctataaatagaaatagagggagggaaagaggcattgagtgagtaattt-aatttggataatggagttaagg |
329 |
Q |
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| T |
771442 |
gagttacttaattgtaattggttgactgtctataaatagaaatagagggagggaaagagtcattgagcgagtaatttaaatttggataatggagttaagg |
771541 |
T |
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| Q |
330 |
ttctcataacaacctgaagtgtatcgtttactcaatttaatatagaattat |
380 |
Q |
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| T |
771542 |
ttctcataacaacgtgaagtgtatcatttactcaatttaatatagaattat |
771592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 771666 - 771720
Alignment:
| Q |
377 |
ttatgtaagtattattgtattaaaagccatacacaagagtgtatgactacaaact |
431 |
Q |
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| T |
771666 |
ttatgtaagtattattgtattaaaagccatacacaagagtgtatgactacaaact |
771720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 207 - 378
Target Start/End: Original strand, 25386792 - 25386963
Alignment:
| Q |
207 |
ttatgttagtatgccttttagcaagagttacttaattgtaattggttgactgtctataaatagaaatagagggagggaaagaggcattgagtgagtaatt |
306 |
Q |
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| T |
25386792 |
ttatgttggtatcccttttagcaagagttagttaatgctgatgagttaactgtctataaatataaatagagggagggaaagaggcattgagtgagtaatt |
25386891 |
T |
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| Q |
307 |
-taatttggataatggagttaaggttctcataacaacctgaagtgtatcgtttactcaatttaatatagaatt |
378 |
Q |
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| T |
25386892 |
aaaatttggat-ggagagttaaggttctcataacaacctgaagtgtatcatttactcaattgaatagagaatt |
25386963 |
T |
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