View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9294_3 (Length: 333)
Name: NF9294_3
Description: NF9294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9294_3 |
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| [»] scaffold0088 (2 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 52142 - 52304
Alignment:
| Q |
5 |
tttccatcttcatgttcttcaaattctgtgtcttttagttttctcaataaatcttgtaatgcaattttacctctttcatgtaaatctaggaaaattaatc |
104 |
Q |
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| T |
52142 |
tttccatcttcatgttcttcaaattttgtgtcttttagtattctcaataaatcttgcaatgcaatttttcctctttcatgtaaatctaggaaaataattc |
52241 |
T |
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| Q |
105 |
ctgctaatgctttgtggtactttaggcttggtcatttgtcacaccaaagattacgttcaatgt |
167 |
Q |
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| T |
52242 |
ctgctaatgctttggggcactttaggcttggtcatttatcacaccaaagattacgttcaatgt |
52304 |
T |
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Target: scaffold0088; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 52320 - 52369
Alignment:
| Q |
273 |
cttctaacaattttgaactaattcacttagagatttggggtcccctctct |
322 |
Q |
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| T |
52320 |
cttctaacaattttgaactaattcacttagagatttggggtcccctctct |
52369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29499116 - 29499375
Alignment:
| Q |
1 |
atactttccatcttcatgttcttcaaattctgtgtcttttagttttctcaataaatcttgtaatgcaattttacctctttcatgtaaatctaggaaaatt |
100 |
Q |
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| T |
29499116 |
atacattccatcttcatgtacttcaaattctatgtcttttagtttttccaataaatcttgtaatgttgttttacctcgttcatgtaattctagcaatagt |
29499215 |
T |
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| Q |
101 |
aatcctgctaatgctttgtggtactttaggcttggtcatttgtcacaccaaagattacgttcaatgtcacttttgtatcc--aca-tattactaatgata |
197 |
Q |
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| T |
29499216 |
attccatctaatgccttgtggcactttagacttggtcatttatctcaccaaagacttcactctatgtctcttttgtatcccaacattatcaataacaata |
29499315 |
T |
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| Q |
198 |
atgaagccgtatgtgattcgtgccattcttctaaacagaaacatttacctttcacttcta |
257 |
Q |
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| T |
29499316 |
ataaagatgtctgtgatttgtgccatttttctaaacataaacatttatcttttacttcta |
29499375 |
T |
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