View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9294_low_1 (Length: 236)
Name: NF9294_low_1
Description: NF9294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9294_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 39849407 - 39849196
Alignment:
| Q |
20 |
aggccatgcatgattataaaatagttaagtatagaacagttgaaagaaaggtgataatagtggtaaccacgaatactatatcaaattttccataatactt |
119 |
Q |
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| T |
39849407 |
aggccatgcatgattataaaatagttaagtatagaacagttgaaagaaaggtgataatagtggtaaccacgaatactatatcaaattttccataatactt |
39849308 |
T |
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| Q |
120 |
ta-----ttaaaagatcaaataatttacctgatgccaaattgcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgatc |
214 |
Q |
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| T |
39849307 |
taattttttaaaagatcaaataatttacctgatgccaagttgcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgaac |
39849208 |
T |
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| Q |
215 |
tcttctctgctt |
226 |
Q |
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|||||| ||||| |
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| T |
39849207 |
tcttctttgctt |
39849196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 38453167 - 38453318
Alignment:
| Q |
28 |
catgattataaaatagttaagtatagaacagttgaaagaaaggtgataatagtggtaaccacgaatactatatcaaattttccataatactttatt---- |
123 |
Q |
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| T |
38453167 |
catgattataaaataattaagtatataacaattgaaa-aaaggtgataatagtggtaaccatgaatactatatcaaattttccataatagttttttgttc |
38453265 |
T |
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| Q |
124 |
aaaagatcaaataatttacctgatgccaaattgcagattaagattcatataat |
176 |
Q |
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| T |
38453266 |
aaaaaatcaaataatttacctgatgccaagttgcaaattaagagtcagataat |
38453318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 38633592 - 38633478
Alignment:
| Q |
106 |
tttccataatactttattaaaagatcaaataatttacctgatgccaaattgcagattaagattcatataatagctttgatggtcttcaaaattgcccata |
205 |
Q |
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||||| ||||||||| || ||||||||| ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |
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| T |
38633592 |
tttccttaatactttttttaaagatcaagtaatttacctgttgccaagttgcagattaagattcagatactagctttgatggtcttcaaaaaggcccata |
38633493 |
T |
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| Q |
206 |
tgcacgatctcttct |
220 |
Q |
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| T |
38633492 |
tacacgatctcttct |
38633478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34915840 - 34915890
Alignment:
| Q |
28 |
catgattataaaatagttaagtatagaacagttgaaagaaaggtgataata |
78 |
Q |
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| T |
34915840 |
catgattataaaataattaagtatagaacagttgatagaaagatgaaaata |
34915890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 36952095 - 36952041
Alignment:
| Q |
127 |
agatcaaataatttacctgatgccaaattgcagattaagattcatataatagctt |
181 |
Q |
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| T |
36952095 |
agatcaaataatttacctgatgccaagctgcaaattaagcttcagataatagctt |
36952041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 34544493 - 34544541
Alignment:
| Q |
30 |
tgattataaaatagttaagtatagaacagttgaaagaaaggtgataata |
78 |
Q |
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| T |
34544493 |
tgattataaaagaattaagtatagaacagtggatagaaaggtgataata |
34544541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 44475562 - 44475395
Alignment:
| Q |
57 |
agttgaaagaaaggtgataata--gtggtaaccacgaatactatatcaaattttccataatactttattaaaagatcaaataatttacctgatgcc---- |
150 |
Q |
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|||||||| ||||||||||||| |||||||||| |||||| | ||||||||||| |||||||||| | |||||| ||||||||||||||||||| |
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| T |
44475562 |
agttgaaacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaaataatttacctgatgccaagt |
44475463 |
T |
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| Q |
151 |
-aaattgcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgatctct |
217 |
Q |
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| T |
44475462 |
taagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctct |
44475395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 7045418 - 7045490
Alignment:
| Q |
133 |
aataatttacctgatgccaaattgcagattaagattcatataatagctttgatggtcttcaaaattgcccatat |
206 |
Q |
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| T |
7045418 |
aatattttacctgatgc-aagttgcaaattaagattcagataatagctttgatggtcttctaaaatggccatat |
7045490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 32717685 - 32717620
Alignment:
| Q |
29 |
atgattataaaatagttaagtatagaacagttgaaagaaaggtgataatagtggtaaccacgaata |
94 |
Q |
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|||||| ||||||| |||| |||||||| ||||||||||| || ||||| ||||||||| ||||| |
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| T |
32717685 |
atgattttaaaataattaaatatagaactgttgaaagaaaagtaataattctggtaaccatgaata |
32717620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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