View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9294_low_2 (Length: 207)
Name: NF9294_low_2
Description: NF9294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9294_low_2 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 11746240 - 11746395
Alignment:
| Q |
37 |
tgccacagtacacatatcttcatgtgacatagcagtcctcccatcatccgagtggagcttactatccttcttcactttgccacggactaccgcggatgta |
136 |
Q |
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| T |
11746240 |
tgccacaatacacatatcttcatttgacatagcagtcctcccatcatccgagtggagcttactatccttcttcactttgccacgggctatcgcggatgtt |
11746339 |
T |
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| Q |
137 |
tgaaagaactttgtattcatgtccccttccttcaaccagtggattttcgctctctg |
192 |
Q |
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| T |
11746340 |
tgaaagaactttgtattcatgtccccttccttcaaccagtggattttccctctctg |
11746395 |
T |
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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 43320753 - 43320921
Alignment:
| Q |
28 |
ataaccttgtgccacagtacacatatcttcatgtgacatagcagtcctcccatcatccgagtggagcttactatccttcttcactttgccacggactacc |
127 |
Q |
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| T |
43320753 |
ataactttgtgccacgttacacatatcctcctgtgtcgtatctgttatcccatcatccgtgcggagcttactaaccttcttcactttgccacgggctatc |
43320852 |
T |
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| Q |
128 |
gcggatgtatgaaagaactttgtattcatgtccccttccttcaaccagtggattttcgctctctgcttc |
196 |
Q |
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| T |
43320853 |
gctgatgtatgaaagaacttagtatttatatccccttccttcaaccaatgcattttcactctttgcttc |
43320921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 7124660 - 7124494
Alignment:
| Q |
28 |
ataaccttgtgccacagtacacatatcttcatgtgacatagcagtcctcccatcatccgagtggagcttactatccttcttcactttgccacggactacc |
127 |
Q |
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| T |
7124660 |
ataaacttgtgccacgttacacatatccttttgcgatgtagccgtcctcccatcatctgtgcggagcttactaaccttcttcaatttgccacgggctatc |
7124561 |
T |
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| Q |
128 |
gcggatgtatgaaagaactttgtattcatgtccccttccttcaaccagtggattttcgctctctgcttc |
196 |
Q |
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| T |
7124560 |
actgat--atgaaagaacttagtattcatatccccttccttcaaccagtgcatttttgctctttgcttc |
7124494 |
T |
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Target: scaffold0050 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 14761 - 14631
Alignment:
| Q |
66 |
tagcagtcctcccatcatccgagtggagcttactatccttcttcactttgccacggactaccgcggatgtatgaaagaactttgtattcatgtccccttc |
165 |
Q |
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| T |
14761 |
tagccgtcctcccatcatctgtgcggagcttactaaccttcttcactttgccatgggctatcgctgatgtatgaaagaacttagtattcatatccccttc |
14662 |
T |
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| Q |
166 |
cttcaaccagtggattttcgctctctgcttc |
196 |
Q |
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| T |
14661 |
cttcaactagtgcattttcactctttgcttc |
14631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 27265949 - 27265884
Alignment:
| Q |
131 |
gatgtatgaaagaactttgtattcatgtccccttccttcaaccagtggattttcgctctctgcttc |
196 |
Q |
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| T |
27265949 |
gatgtatgaaagaacttagtattcatgtccccttccttcaactagtgcattttttctctttgcttc |
27265884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 43447972 - 43447925
Alignment:
| Q |
149 |
gtattcatgtccccttccttcaaccagtggattttcgctctctgcttc |
196 |
Q |
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| T |
43447972 |
gtatccatgtccccttccttcaaccagtgcattttcgctatttgcttc |
43447925 |
T |
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