View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9295_low_1 (Length: 298)

Name: NF9295_low_1
Description: NF9295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9295_low_1
NF9295_low_1
[»] chr1 (5 HSPs)
chr1 (17-185)||(4877533-4877702)
chr1 (222-282)||(4877690-4877750)
chr1 (159-209)||(670434-670484)
chr1 (170-215)||(28326870-28326916)
chr1 (9-59)||(47569542-47569592)
[»] chr3 (1 HSPs)
chr3 (137-215)||(47923009-47923090)
[»] chr2 (1 HSPs)
chr2 (179-215)||(9066862-9066898)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
Q  17 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877533 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 4877632  T
Q  117 atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt 185  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4877633 atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt 4877702  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 4877690 - 4877750
Alignment:
Q  222 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacct 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877690 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacct 4877750  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
Q  159 ctagaggtctattagattacatgctttttggtttgctaattaaagaactat 209  Q
    |||||||||||||||||||||||||||   |||| ||||||||||||||||    
T  670484 ctagaggtctattagattacatgctttccagttttctaattaaagaactat 670434  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
Q  170 ttagattacatgctttttg-gtttgctaattaaagaactatgctttt 215  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  28326870 ttagattacatgcttttttagtttgctaattaaaggactatgctttt 28326916  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
Q  9 aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca 59  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||||    
T  47569542 aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca 47569592  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
Q  137 ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt 215  Q
    ||||| ||||| || |||||||||||||||||||||   ||||| |||||| ||||||||||||| ||||||||||| ||||    
T  47923090 ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt 47923009  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
Q  179 atgctttttggtttgctaattaaagaactatgctttt 215  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  9066862 atgctttttggtttgctaattgaaggactatgctttt 9066898  T

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