View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9295_low_2 (Length: 281)
Name: NF9295_low_2
Description: NF9295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9295_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 15545788 - 15546037
Alignment:
| Q |
14 |
agaatcaagaattttcctatccctcagaacaaagatgtaaccatcaattatacatcttgtatagacaatatgataactggagaaatgaacacatacagtg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
15545788 |
agaatcaagaattttcctatccctcagaacaaagaggtaaccatcaattatacatcttgtatagaaaatatgataactagagaaataaacacatacagtg |
15545887 |
T |
|
| Q |
114 |
aagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15545888 |
aagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattta |
15545987 |
T |
|
| Q |
214 |
attttaatcattttctcataatttttgtacaagtttttccctgtcatccc |
263 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15545988 |
attttaatcattttctcgtaatttttgtacaagtttttccctgtcatccc |
15546037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 113 - 263
Target Start/End: Original strand, 15522295 - 15522445
Alignment:
| Q |
113 |
gaagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattt |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15522295 |
gaagaagctatgttcattccagtattgaatcaaccattgtcttctaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattt |
15522394 |
T |
|
| Q |
213 |
aattttaatcattttctcataatttttgtacaagtttttccctgtcatccc |
263 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15522395 |
aattttaatcattttctcgtaatttttgtacaagtttttccctgtcatccc |
15522445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 15528351 - 15528549
Alignment:
| Q |
14 |
agaatcaagaattttcctatccctcagaacaaagatgtaaccatcaattatacatcttgtatagacaatatgataactggagaaatgaacacatacagtg |
113 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||| || || ||| | ||||||| | ||||||||| ||| |
|
|
| T |
15528351 |
agaatcaagaattttcctctacctcagaacaaaaatgtaaccatcaattattcatctggtgtaaacagtca---aactggacatgcaaacacatacggtg |
15528447 |
T |
|
| Q |
114 |
aagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattta |
213 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15528448 |
aagaagctatgttcattccagtgttgaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttattta |
15528547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 15518002 - 15518099
Alignment:
| Q |
110 |
agtgaagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |||| || |||||||||||||||| |
|
|
| T |
15518002 |
agtgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctactacgttataagaaggaagggaaagaatcaagggtatgtatt |
15518099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 15550606 - 15550682
Alignment:
| Q |
129 |
ttccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgta |
205 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| || || ||||| ||| ||||| ||||||| |||||||||||||| |
|
|
| T |
15550606 |
ttccggtattgaatcaaccattgtcttcgaaccgttattatgtcatacgaaggaaggggaagaatcaagggtatgta |
15550682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15522220 - 15522268
Alignment:
| Q |
14 |
agaatcaagaattttcctatccctcagaacaaagatgtaaccatcaatt |
62 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| || |||||||||||| |
|
|
| T |
15522220 |
agaatcaagaattttcctttacctcagaacaaaaatttaaccatcaatt |
15522268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University