View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9295_low_3 (Length: 264)
Name: NF9295_low_3
Description: NF9295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9295_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 51302387 - 51302139
Alignment:
| Q |
1 |
ttatttttgaatagtcttgaagcttgaaatcaagttttaaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggag |
100 |
Q |
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| T |
51302387 |
ttatttttgaatagtcttgaagcttgaaatcaagttttaaagtggagaatttcttgctgtttcaagttttggtgaagtctgttagttattctggtgggag |
51302288 |
T |
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| Q |
101 |
gcttt-ctttggttgtatgagtttggtgcgaaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgc |
199 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302287 |
gcttttctttggttgtatgagtttgttgcgaaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgc |
51302188 |
T |
|
| Q |
200 |
ttgccttggggatttgttcttggtttttatctgttctgtgtccagcttg |
248 |
Q |
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| T |
51302187 |
ttgccttggggatttgttcttggtttttatctgttctgtgtccagcttg |
51302139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 44113453 - 44113231
Alignment:
| Q |
17 |
ttgaagcttgaaatcaagttttaaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgt |
115 |
Q |
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|||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44113453 |
ttgaagcttgaaatagagtttgaaagtggagaatttcttactatttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgt |
44113354 |
T |
|
| Q |
116 |
atgagtttggtgcgaaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttg |
215 |
Q |
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| T |
44113353 |
atgagttaggtgcgaaggagttaggtacatttttagcctgttcaagtattgc------ttgtgtgctactgctggaaattttgcttg---tggggatttg |
44113263 |
T |
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| Q |
216 |
ttcttggtttttatctgttctgtgtccagcttg |
248 |
Q |
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||||||| |||| |||||||||||||||||||| |
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| T |
44113262 |
ttcttgg-ttttgtctgttctgtgtccagcttg |
44113231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 50016308 - 50016238
Alignment:
| Q |
17 |
ttgaagcttgaaatcaagttttaaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagtt |
87 |
Q |
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| T |
50016308 |
ttgaagcttgaaattgagtttgaaagtggagaatttcttactatttcaagttttggtgaagtctgttagtt |
50016238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18843373 - 18843337
Alignment:
| Q |
1 |
ttatttttgaatagtcttgaagcttgaaatcaagttt |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
18843373 |
ttatttttgaatagtcttgaagcttgaaatcaagttt |
18843337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18854841 - 18854805
Alignment:
| Q |
1 |
ttatttttgaatagtcttgaagcttgaaatcaagttt |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
18854841 |
ttatttttgaatagtcttgaagcttgaaatcaagttt |
18854805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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