View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9295_low_6 (Length: 220)
Name: NF9295_low_6
Description: NF9295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9295_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 52836465 - 52836652
Alignment:
| Q |
15 |
tgttacaggtgggtaacctccagcctgctccaaagaagataaagttcgaagtctgagtaggtacatgtttcctctttaaaaatttggtcattcaccttca |
114 |
Q |
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| T |
52836465 |
tgttacaggtgggcaacctccagcctgctccaaagaagataaagttcaaagtctgagtaggtacatgtttcctctttaaaaatttggtcattcaccttca |
52836564 |
T |
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| Q |
115 |
gcaaagagggtggattctctaatggttatatattgcttgacctaataataggaataggagattcattttcctttgccatatgttgtgtttgatgt |
209 |
Q |
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| T |
52836565 |
gcaaagagggtggattctctaatggttatatattgcttgacctaat-------ataggagattcattttcctttgccatatgttgtgtttgatgt |
52836652 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 48967483 - 48967386
Alignment:
| Q |
15 |
tgttacaggtgggtaacctccagcctgctccaaagaagataaagttcgaagtctgagtaggt-acatgtttcctctttaaaaatttggtcattcacct |
111 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||||| ||| ||||||||||| |
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| T |
48967483 |
tgttgcaggtgggtaacctccagtctgctccaaagaagataaagttcgaagactgagtaggtaacatgcttcttctttaaaagtttagtcattcacct |
48967386 |
T |
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