View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9296_high_5 (Length: 273)
Name: NF9296_high_5
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 35423481 - 35423227
Alignment:
| Q |
1 |
tactccaatcactttaatattgtcatatttagatacattttatgcgctattaacttgaatattttgaatttgtttgcatattgaaattcatgttgcagat |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423481 |
tactccaatcactttaatgttgtcacctttagatacattttatgcgctattaacttgaatattttgaatttgtttgcatattgaaattcatgttgcaatc |
35423382 |
T |
|
| Q |
101 |
aatgtaatatatatcgatctgaatgactacattatttttagtcatcaaagaaaaaagaataacttggcttttgttttagctaaacaaactcatttgtttc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423381 |
aatgtaatatatagcgatctgaatgactacattatttttagtcataaaagaaaaaagaataacctggcttttgttttagctaaacaaactcatttgtttc |
35423282 |
T |
|
| Q |
201 |
ctaatcatatgcccaagtctctctttaaaattgaatttgaaagttttgtaaaaatca |
257 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423281 |
ctaatc--atgcccaagtctctctttaaaattgaatttgaaagttttgtaaaaatca |
35423227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University