View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_1 (Length: 874)
Name: NF9296_low_1
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 552 - 863
Target Start/End: Complemental strand, 2101806 - 2101494
Alignment:
| Q |
552 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
650 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
|
| Q |
651 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
749 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
750 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
849 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
|
| Q |
850 |
gattcacctctctg |
863 |
Q |
| |
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|||||||||||||| |
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| T |
2101507 |
gattcacctctctg |
2101494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 2102577 - 2102304
Alignment:
| Q |
16 |
cttttaatgttatcattattcaattcattcagatacaatttaagtgataaagttataataaatgaagttaggttagtgcatacacattaaggggaactaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||| |||||||||| |||||| |||||| |
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| T |
2102577 |
cttttaatgttatcattattcaattcattcagatgcaatttaagtgataa-gttataatacatgaagataggttaatgcatacacagtaaggg-aactaa |
2102480 |
T |
|
| Q |
116 |
cctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccattatattcagc |
215 |
Q |
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| T |
2102479 |
cctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccattatattcagc |
2102380 |
T |
|
| Q |
216 |
ggaattatttgtttcaatgccgagtccttggctgactccatggacctataaagagacataaagtgttggctacatt |
291 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
2102379 |
ggaattatttgtttgaatgccgagtccttggctgacgccatggacctataaagagacataaagtgttagctacatt |
2102304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 333 - 557
Target Start/End: Complemental strand, 2102306 - 2102059
Alignment:
| Q |
333 |
attcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
432 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102306 |
attcacccgactcccatctgcagaacgaagaacagctccagcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
2102207 |
T |
|
| Q |
433 |
tgcaagattttgtttatg-ttacttcatag---------------------ataaacctta-gagttaaacatgacgggcaactccttatagaggatatc |
509 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||| |
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| T |
2102206 |
tgcaagattttgtttatgtttacttcatagataaaatagagttatcatgatataaaccttaggagttaaacatgatgggcaacgccttatagaggatatc |
2102107 |
T |
|
| Q |
510 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2102106 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 2106297 - 2106201
Alignment:
| Q |
341 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
437 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||| ||| ||||| ||||||| ||| |||||||| |||||||| |||||| ||||||| |
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| T |
2106297 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2106201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 2097810 - 2097714
Alignment:
| Q |
341 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
437 |
Q |
| |
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||||||||||| ||||||| || | |||||||||||||| ||| ||||| || |||| ||| |||||||| |||||||| |||||| ||||||| |
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| T |
2097810 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2097714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 2041794 - 2041741
Alignment:
| Q |
384 |
tccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
437 |
Q |
| |
|
||||||||||||||| || || |||||||||| |||||| ||||||| |||||| |
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|
| T |
2041794 |
tccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaa |
2041741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 107 - 443
Target Start/End: Original strand, 39183543 - 39183883
Alignment:
| Q |
107 |
gggaactaacctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccatt |
206 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
39183543 |
gggaactaacctgcttgcaaacaagctgagagtcacctcggacatgaacatgctcatatccttggttcctagcttcattcagccccaaaattagaccatt |
39183642 |
T |
|
| Q |
207 |
atattcagcggaattatttgtttcaatgccgagtccttggctgactccatggacctataaagagacataaagtgttggctaca------tttgatatatt |
300 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||| | |||| ||||| ||||| |
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|
| T |
39183643 |
atattcagcagaattatttgtttgagtgccgagtccttggctgacgccatggacctataaagagac--aaagtgttaggtacatttgactttgacatatt |
39183740 |
T |
|
| Q |
301 |
gtataatgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactgg |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39183741 |
gtatagtgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacgcagaacagctcctgcaccagaccttccaggatttccactgg |
39183840 |
T |
|
| Q |
401 |
atgctccatcaaattcaaggatgcaagaacgctgcaagatttt |
443 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
39183841 |
atgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 708 - 834
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
708 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
|
| Q |
808 |
tgccaaacagatcctaatcattcataa |
834 |
Q |
| |
|
||||||||||||||||| |||| |||| |
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|
| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
648 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
692 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 591
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
552 |
taataacactggttacaccaccaaaaacttagacacataa |
591 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
407 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
466 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 4952093 - 4952165
Alignment:
| Q |
219 |
attatttgtttcaatgccgagtccttggctgactccatggacctataaagagacataaagtgttggctacatt |
291 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||| |
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|
| T |
4952093 |
attacttgttttagtgccgagtccttggctgatgccatggacctataaagagatataaagagttagctacatt |
4952165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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