View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9296_low_11 (Length: 355)
Name: NF9296_low_11
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 23868733 - 23869003
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868733 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
23868832 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23868833 |
atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
23868932 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868933 |
tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
23869003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 24307224 - 24307494
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307224 |
gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
24307323 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24307324 |
atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
24307423 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||| |
|
|
| T |
24307424 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttctt |
24307494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 64 - 338
Target Start/End: Complemental strand, 23408821 - 23408547
Alignment:
| Q |
64 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23408821 |
tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc |
23408722 |
T |
|
| Q |
164 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23408721 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac |
23408622 |
T |
|
| Q |
264 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |||| |
|
|
| T |
23408621 |
ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctctt |
23408547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 64 - 338
Target Start/End: Complemental strand, 23453653 - 23453379
Alignment:
| Q |
64 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23453653 |
tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23453554 |
T |
|
| Q |
164 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23453553 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc |
23453454 |
T |
|
| Q |
264 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||| |
|
|
| T |
23453453 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttctt |
23453379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 64 - 338
Target Start/End: Original strand, 23402071 - 23402345
Alignment:
| Q |
64 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23402071 |
tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23402170 |
T |
|
| Q |
164 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23402171 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc |
23402270 |
T |
|
| Q |
264 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
23402271 |
ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttctt |
23402345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 23415986 - 23415716
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23415986 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23415887 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415886 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
23415787 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| |||| |
|
|
| T |
23415786 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctctt |
23415716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 23885828 - 23886098
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23885828 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23885927 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23885928 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt |
23886027 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
23886028 |
tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttctt |
23886098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 26832736 - 26833006
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26832736 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26832835 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26832836 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26832935 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||||| |
|
|
| T |
26832936 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttctt |
26833006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 26434025 - 26434295
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26434025 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26434124 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26434125 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26434224 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||||| |
|
|
| T |
26434225 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttctt |
26434295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 26435805 - 26436075
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26435805 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26435904 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26435905 |
atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26436004 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| || ||||||| |
|
|
| T |
26436005 |
tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttctt |
26436075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 34662318 - 34662048
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34662318 |
gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg |
34662219 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
34662218 |
atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt |
34662119 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
338 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || ||||||| |
|
|
| T |
34662118 |
tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttctt |
34662048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
157 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
256 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
257 |
gtcagacttgttcttcctggtgaattggccaag |
289 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23416050 - 23416018
Alignment:
| Q |
1 |
gaagctaccaaaggaaggtggttcagctgccgg |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23416050 |
gaagctaccaaaggaaggtggttcagctgccgg |
23416018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 340
Target Start/End: Original strand, 41670401 - 41670673
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
41670401 |
gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg |
41670500 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || |||||||| || | ||||| |
|
|
| T |
41670501 |
atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt |
41670600 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttga |
340 |
Q |
| |
|
||| || |||||| | || ||||||||||| ||||| ||||| || ||||| || || |||||||| |||||| |
|
|
| T |
41670601 |
tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctcttga |
41670673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 65 - 324
Target Start/End: Original strand, 40795767 - 40796026
Alignment:
| Q |
65 |
gtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
164 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||| |
|
|
| T |
40795767 |
gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca |
40795866 |
T |
|
| Q |
165 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
264 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||| || | || |
|
|
| T |
40795867 |
atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct |
40795966 |
T |
|
| Q |
265 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaa |
324 |
Q |
| |
|
|||||||| || ||| | |||||||| ||||| || || ||||| ||||| || ||||| |
|
|
| T |
40795967 |
cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaa |
40796026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 338
Target Start/End: Original strand, 33216594 - 33216716
Alignment:
| Q |
216 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || || |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
316 |
tgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||| ||||| ||| |||||| |
|
|
| T |
33216694 |
tgtgaccaagtttactggttctt |
33216716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 340
Target Start/End: Original strand, 29391467 - 29391739
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttga |
340 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| |||||||| || ||||| || || || || ||||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgttaccaaatttacgagttcttga |
29391739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
160 |
catcaatgatatcttcgagaagcttgctcaagaatca |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 216 - 338
Target Start/End: Original strand, 47317431 - 47317553
Alignment:
| Q |
216 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || || ||||| |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
316 |
tgtgactaagttcactagttctt |
338 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctt |
47317553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 68 - 341
Target Start/End: Complemental strand, 40180547 - 40180274
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
267 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
268 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttgat |
341 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| || || ||||| || || ||||| || ||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgttaccaaattcaccagctcttgat |
40180274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
160 |
catcaatgatatcttcgagaagcttgctcaagaatca |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
68 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
167 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
168 |
atatcttcgagaagcttgctcaagaa |
193 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
251 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
303 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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