View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9296_low_13 (Length: 277)

Name: NF9296_low_13
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9296_low_13
NF9296_low_13
[»] chr6 (2 HSPs)
chr6 (18-247)||(6562105-6562334)
chr6 (24-76)||(2401226-2401278)
[»] chr3 (2 HSPs)
chr3 (24-120)||(11936260-11936356)
chr3 (44-101)||(22850930-22850987)
[»] chr5 (2 HSPs)
chr5 (24-242)||(34835195-34835412)
chr5 (48-231)||(1682540-1682723)
[»] chr7 (1 HSPs)
chr7 (25-114)||(19527139-19527228)
[»] chr8 (2 HSPs)
chr8 (44-120)||(35199736-35199812)
chr8 (202-244)||(5726119-5726161)
[»] chr4 (3 HSPs)
chr4 (24-86)||(37008489-37008551)
chr4 (44-86)||(56237784-56237826)
chr4 (43-112)||(9779375-9779443)
[»] chr2 (1 HSPs)
chr2 (44-101)||(29868970-29869027)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 6562334 - 6562105
Alignment:
Q  18 atatgggatacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6562334 atatgggatacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcattgacataccaaatgatattcgattaatattaa 6562235  T
Q  118 attatgtaaacattatctttgtcatattaactttcaatacaacagtggatctttaatatagttatgtggtaaataattataagaggtgtcatatattaag 217  Q
    ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6562234 attatgtaaacattatctttgtcatattaacttccaatccaatagtggatctttaatatagttatgtggtaaataattataagaggtgtcatatattaag 6562135  T
Q  218 tttgacactatagtgtcaattaatcataac 247  Q
    ||||||||||||||||||||||||||||||    
T  6562134 tttgacactatagtgtcaattaatcataac 6562105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 2401226 - 2401278
Alignment:
Q  24 gatacataaaaattgacatgtttgataaaagttcataagacattaattctgat 76  Q
    ||||||| |||||| || || |||||||||||||||||||| |||||| ||||    
T  2401226 gatacatcaaaattaacttgcttgataaaagttcataagacgttaattttgat 2401278  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 11936356 - 11936260
Alignment:
Q  24 gatacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgttaaatt 120  Q
    |||||||||||||| || |||||||| |||||||||||| ||||||||   ||||| ||||||  |||| ||| ||||||||||||| |||||||||    
T  11936356 gatacataaaaattaacgtgtttgattaaagttcataaggcattaatttacatgcagctcattggcatatcaattgatattcgattattgttaaatt 11936260  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 22850987 - 22850930
Alignment:
Q  44 tttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgat 101  Q
    |||||||||||||||||||||||||||| ||||||| ||| || ||||  ||||||||    
T  22850987 tttgataaaagttcataagacattaattttgatgcatctcgttgacatgtcaaatgat 22850930  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 34835412 - 34835195
Alignment:
Q  24 gatacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgttaaattatg 123  Q
    ||||||| |||||| ||||||| |||||||||| ||||||| |||||| |||||||| |||||  || | |||||||||| |||||||| | ||||| |     
T  34835412 gatacatcaaaattaacatgtt-gataaaagtttataagactttaattttgatgcaattcattggcacatcaaatgatatccgattaatatcaaatttta 34835314  T
Q  124 taaacattatctttgtcatattaactttcaatacaacagtggatctt-taatatagttatgtggtaaataattataagaggtgtcatatattaagtttga 222  Q
    ||||||  |||| ||| ||  || |||||||| ||| |||| || || ||| || | ||||| ||||| || ||| | | ||||| ||||||||||||||    
T  34835313 taaacaagatctatgtgatgatagctttcaattcaaaagtgaattttgtaacat-gatatgtagtaaagaagtatcaaatgtgtcgtatattaagtttga 34835215  T
Q  223 cactatagtgtcaattaatc 242  Q
     ||  | |||||||||||||    
T  34835214 tacgttggtgtcaattaatc 34835195  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 1682723 - 1682540
Alignment:
Q  48 ataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgttaaattatgtaaacattatctttgtcatattaa 147  Q
    ||||||||| ||||||| |||||| | |||  ||||||   |||| |||||| ||| | |||||  ||||||| |||| |||| |||| ||| ||| ||     
T  1682723 ataaaagtttataagacgttaattttaatgtcactcataggcatatcaaatggtatccaattaacattaaattttgtagacatgatctatgtgataatag 1682624  T
Q  148 ctttcaatacaacagtggatctttaatatagttatgtggtaaataattataagaggtgtcatatattaagtttgacactatagt 231  Q
    ||||||||  ||| ||| || ||||||  | ||||||| |||| |||||||| |  ||||||||||||| |||||||| |||||    
T  1682623 ctttcaatcaaacggtgaatttttaatgcaattatgtgataaagaattataaaaaatgtcatatattaactttgacaccatagt 1682540  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 19527139 - 19527228
Alignment:
Q  25 atacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgt 114  Q
    ||||||||||||| ||  | ||||||||||||||||| || |||||| ||||||| ||||||  | || ||||||||||| |||||||||    
T  19527139 atacataaaaattaacgcgcttgataaaagttcataaaacgttaattttgatgcagctcattagcttagcaaatgatatttgattaatgt 19527228  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 35199736 - 35199812
Alignment:
Q  44 tttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaatgttaaatt 120  Q
    ||||||||||||| |||||||||||||| |||| ||| | |||  |||| |||||||||| |||||||||| |||||    
T  35199736 tttgataaaagtttataagacattaattttgatacaatttattggcatatcaaatgatatccgattaatgtaaaatt 35199812  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 5726119 - 5726161
Alignment:
Q  202 ggtgtcatatattaagtttgacactatagtgtcaattaatcat 244  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  5726119 ggtgtcatatattaagtttgatattatagtgtcaatcaatcat 5726161  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 37008489 - 37008551
Alignment:
Q  24 gatacataaaaattgacatgtttgataaaagttcataagacattaattctgatgcaactcatt 86  Q
    |||||||||||||| |||||||| |||||| |||| ||||||||||||   ||||||||||||    
T  37008489 gatacataaaaattaacatgtttaataaaatttcagaagacattaatttacatgcaactcatt 37008551  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 56237826 - 56237784
Alignment:
Q  44 tttgataaaagttcataagacattaattctgatgcaactcatt 86  Q
    ||||||||||||||||||||  |||||| ||||||||||||||    
T  56237826 tttgataaaagttcataagatgttaattttgatgcaactcatt 56237784  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 9779375 - 9779443
Alignment:
Q  43 gtttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgatattcgattaat 112  Q
    |||||||||||||  ||||||| |||||| | |||||||||||| ||||| |||||||||| | ||||||    
T  9779375 gtttgataaaagta-ataagacgttaattttaatgcaactcattgacatatcaaatgatatcctattaat 9779443  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 29869027 - 29868970
Alignment:
Q  44 tttgataaaagttcataagacattaattctgatgcaactcattcacataccaaatgat 101  Q
    |||||||||||||||||||||||||||| ||||  | |||||| | ||| ||||||||    
T  29869027 tttgataaaagttcataagacattaattttgatatatctcattgaaatatcaaatgat 29868970  T

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