View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_17 (Length: 264)
Name: NF9296_low_17
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 45528250 - 45528006
Alignment:
| Q |
1 |
aacagcaaaattacacaaaacaaccaaaaacgttatacaatcaaccggaacactaaaatgttgaatcnnnnnnntcgaaatttcacctccaagaaaacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45528250 |
aacagcaaaattacacaaaacaaccaaaaacgttatacaatcaaccggaacactaaaatgttgaatcaaaaaaatcgaaatttcacctccaagaaaacct |
45528151 |
T |
|
| Q |
101 |
aatacaacaaaggaagaaaaagccatgtagagttttaagaacgtgatacatcggaaatagaaaagaaggactaagaagaaagtggcgaaagttacgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45528150 |
aatacaacaaaggaagaaaaagccatgtagagttttaagaacgtgatacatcggaaatagaaaagaaggactaagaagaaagtggcgaaagttacgacaa |
45528051 |
T |
|
| Q |
201 |
caacgaaggagagagagtttaaaagtgcgccgaggaatttgtccc |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45528050 |
caacgaaggagagagagtttaaaagtgcgccgaggaatttgtccc |
45528006 |
T |
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