View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_18 (Length: 260)
Name: NF9296_low_18
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 47048404 - 47048636
Alignment:
| Q |
17 |
agccttttcttgattttctctgtccaaaacagaaactagtcacaacagacacaaatgatcaattaaatcttgagcacacttttctaatctctccatcaat |
116 |
Q |
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| T |
47048404 |
agccttttcttgattttctctgtccaaaacagaaactagtcacaacagacacaaatgatcaattaaatcttgagcacacttttctaatctctccatcaat |
47048503 |
T |
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| Q |
117 |
accagtcttcacatctacactactcaacttaatcatagcctttggaaattcaaaatcaaatcttaaccccaataaccctctaaaattcccaccataattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47048504 |
accagtcttcacatctacactactcaacttaatcatagcctttggaaattcaaaatcaaatcttaaccccaataaccctctaaaattcccaccataattt |
47048603 |
T |
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| Q |
217 |
tccaccacccttcttgtagtataatctacccac |
249 |
Q |
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||||||||||||||||||| | ||||| ||||| |
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| T |
47048604 |
tccaccacccttcttgtagcagaatcttcccac |
47048636 |
T |
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