View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_2 (Length: 520)
Name: NF9296_low_2
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 45637159 - 45636692
Alignment:
| Q |
18 |
attatggcattaattatggatgataatctttgactcatgattatattactaaattaatcttttagtcatttatttacaccattctttacttagatttatt |
117 |
Q |
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| T |
45637159 |
attatggcattaattatggatgataatctttgagtcatgattatattactaaattaatcttttagtcatttatttataccattctttacttagatttatt |
45637060 |
T |
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| Q |
118 |
cgaaatatagttgatnnnnnnnntgtgttgtgatcaaagtacaaggattgaatgannnnnnnctcatctaactcttccaataaatgtttgatgaataaag |
217 |
Q |
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| T |
45637059 |
cgaaatatagttgataaaaaaaatgtgttgtgag--------------tgaatgatttttttctcatctaactcttccaataaatgtttgatgaataaag |
45636974 |
T |
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| Q |
218 |
ttgaagttgttatgaacaatgcgatcaacaaggttgtttatctatctttcgataaataaatggttcaaagtccaatcaaagatgttatcagcaacaccat |
317 |
Q |
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| T |
45636973 |
ttgaagttgttatgaacaatgcgatcaacaaggttgttgatctatctttcgataaataaatggttcaaagtccaatcaaagatgttatcggcaacaccat |
45636874 |
T |
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| Q |
318 |
ccaaaatttg-aaggggaagtaatgatagcaattcataatttgtttttcagaatgttaatcaattgatgaattgtacattgatagagatttttagttttc |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45636873 |
ccaaaatttgaaaggggaagtaatgatagcaattcatactttgtttttcagaatgttaatc--------aattgtacattgatagagatttttagttttc |
45636782 |
T |
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| Q |
417 |
tttgcaaaagatagggcatta-----attacattcaatgaagcaaaggttgaattggggattagtgaactgctcaaatgatagagatagt |
501 |
Q |
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| T |
45636781 |
tttgcaaaagatagggcattaattacattacattcaatgaagcaaaggttgaattggggattagtgaactgctcaaatgatagagatagt |
45636692 |
T |
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