View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_27 (Length: 230)
Name: NF9296_low_27
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 35241266 - 35241372
Alignment:
| Q |
100 |
attagagtatatagcaatcttaaaattgaaagtagactaaatatagggaaattacaattgacta-ttttttcctgataacattaagttccataatctgga |
198 |
Q |
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| T |
35241266 |
attagagtatataacaatcttaaaattggaagtaagcaaagtatagggaaattacagtcgactatttttttcttgattacattaaatcccataatctgaa |
35241365 |
T |
|
| Q |
199 |
tttggta |
205 |
Q |
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||||||| |
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| T |
35241366 |
tttggta |
35241372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 24820808 - 24820764
Alignment:
| Q |
58 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcatt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24820808 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcatt |
24820764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 35902435 - 35902391
Alignment:
| Q |
58 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcatt |
102 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
35902435 |
taatagctcatttacatctcattgttggtgtcatagtgcttcatt |
35902391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 1161719 - 1161820
Alignment:
| Q |
2 |
agtcaagatacatattttgcagtctagcatcaactcctaattta-tcaaatcatagttaatagctcatttacctctcattgttggtgtcaaagtgcttca |
100 |
Q |
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|||||||| |||||||| ||||| | ||||||||||||||||| | ||| || | ||||||||| |||| ||||||| |||||||||| | ||||||| |
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| T |
1161719 |
agtcaagaaacatatttcccagtcaaacatcaactcctaatttagttaaaacaaaattaatagcttattttcctctcaccgttggtgtcatattgcttca |
1161818 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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|
| T |
1161819 |
tt |
1161820 |
T |
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