View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_33 (Length: 217)
Name: NF9296_low_33
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_33 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 34218543 - 34218323
Alignment:
| Q |
1 |
cctgcaaagactccaccgagcacccaagtaacaccagcccagcagaagcnnnnnnncggtgcaggccttagttcatctgcctccattggtgataccattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34218543 |
cctgcaaagactccaccgagcacccaagtaacaccagcccagcagaagcaaaaaaacggtgcaggccttagttcatctgcctccattggtgataccattt |
34218444 |
T |
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| Q |
101 |
tcggccgccagagaattcttttactaatgtgctcatgttcttcttccatg----atgtgctgnnnnnnntaaaataagctgagaaggtggaaacacaaag |
196 |
Q |
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| T |
34218443 |
tcggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgcatgtgctgaaaaaaataaaataagctgagaaggtggaaacacaaag |
34218344 |
T |
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| Q |
197 |
agcatagacagatgagattta |
217 |
Q |
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||||||||||||||||||||| |
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| T |
34218343 |
agcatagacagatgagattta |
34218323 |
T |
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Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 45005145 - 45005288
Alignment:
| Q |
67 |
cttagttcatctgcctccattggtgataccattttcggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgnnnnnnnt |
166 |
Q |
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| T |
45005145 |
cttagttcatctagctccatcggtgataccatttttggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgaaaaaaat |
45005244 |
T |
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| Q |
167 |
aaaataagctgagaaggtggaaacacaaagagcatagacagatgag |
212 |
Q |
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| T |
45005245 |
aaaataagctgagatggtggaaacac--agagcatagacagatgag |
45005288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 45003921 - 45003951
Alignment:
| Q |
19 |
agcacccaagtaacaccagcccagcagaagc |
49 |
Q |
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| T |
45003921 |
agcacccaagtaacaccagcccagcagaagc |
45003951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 2681719 - 2681862
Alignment:
| Q |
67 |
cttagttcatctgcctccattggtgataccattttcggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgnnnnnnnt |
166 |
Q |
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|||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2681719 |
cttagttcatctagttccatcggtgataccatttttggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgaaaaaaat |
2681818 |
T |
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| Q |
167 |
aaaataagctgagaaggtggaaacacaaagagcatagacagatgag |
212 |
Q |
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| T |
2681819 |
aaaataagctgagatggtggaaacac--agagcatagacagatgag |
2681862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 2680495 - 2680525
Alignment:
| Q |
19 |
agcacccaagtaacaccagcccagcagaagc |
49 |
Q |
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| T |
2680495 |
agcacccaagtaacaccagcccagcagaagc |
2680525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 5481592 - 5481449
Alignment:
| Q |
67 |
cttagttcatctgcctccattggtgataccattttcggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgnnnnnnnt |
166 |
Q |
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|||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5481592 |
cttagttcatctagatccatcggtgataccatttttggccgccagagaattcttttactaatgtgctcatgttcttcttccatgatgtgctgaaaaaaat |
5481493 |
T |
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| Q |
167 |
aaaataagctgagaaggtggaaacacaaagagcatagacagatgag |
212 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
5481492 |
aaaataagctgagatggtggaaacac--agagcatagacagatgag |
5481449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 5482816 - 5482786
Alignment:
| Q |
19 |
agcacccaagtaacaccagcccagcagaagc |
49 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5482816 |
agcacccaagtaacaccagcccagcagaagc |
5482786 |
T |
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