View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9296_low_34 (Length: 213)

Name: NF9296_low_34
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9296_low_34
NF9296_low_34
[»] chr4 (4 HSPs)
chr4 (15-199)||(47105209-47105393)
chr4 (93-158)||(35851271-35851336)
chr4 (93-188)||(43077265-43077359)
chr4 (91-199)||(16501997-16502106)
[»] chr6 (2 HSPs)
chr6 (92-191)||(26534417-26534514)
chr6 (98-188)||(6946858-6946948)
[»] chr3 (4 HSPs)
chr3 (92-198)||(33753629-33753734)
chr3 (122-170)||(22948432-22948480)
chr3 (106-185)||(22948318-22948397)
chr3 (92-176)||(38489083-38489168)
[»] chr2 (2 HSPs)
chr2 (92-167)||(29043993-29044067)
chr2 (60-90)||(10176567-10176597)
[»] chr7 (2 HSPs)
chr7 (97-168)||(27028464-27028535)
chr7 (92-170)||(9350010-9350087)
[»] chr8 (2 HSPs)
chr8 (92-185)||(30235808-30235900)
chr8 (60-90)||(39901582-39901612)
[»] chr1 (1 HSPs)
chr1 (124-166)||(29938945-29938987)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 47105393 - 47105209
Alignment:
Q  15 cacagaggacagacgggaaaagatgatattttaagggnnnnnnnnagattacctttaaagaatggtgggtaacttaggggtgatgtccttttgggtgttg 114  Q
    |||| ||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||| |||||| | ||||||||||||||||||    
T  47105393 cacacaggacagacgggaaaagatgatattttaagggttttttttagattatctttaaagaatggtgggtaatttagggataatgtccttttgggtgttg 47105294  T
Q  115 attgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatcagtctctg 199  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  47105293 attgtaggggtgtctttattgatgttttgtttataggtgttccgcttatatacggcaccttttgtttgtacttcatcggtctctg 47105209  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 35851271 - 35851336
Alignment:
Q  93 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccg 158  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||    
T  35851271 ggtgatgtccttttgggtgttgatcgcaggggtgtctttattgatgttttgtttttatgtgttccg 35851336  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 43077265 - 43077359
Alignment:
Q  93 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 188  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||| ||| |||  |||||||| || |||||||| |  |||| |||||||||||    
T  43077265 ggtgatgtccttttgagtgttgatcgcaggggtgtctttgttggtg-tttattttcaggtgttctgcctatatacgacgtattttgtttgtacttc 43077359  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 16501997 - 16502106
Alignment:
Q  91 ggggtgatgtccttttgggtgttgattgtaggggtgtctttattggtg-ttttgtttataggtgttccgcttatatacggcacatttagtttgtacttca 189  Q
    |||||| ||||||||||| ||||| ||| | |||||||||| |||| | |||||| |  ||||||||||| ||||||| || | ||| ||||||||||||    
T  16501997 ggggtggtgtccttttggatgttgtttgcaagggtgtctttgttggagtttttgtattcaggtgttccgcctatatacagcgccttttgtttgtacttca 16502096  T
Q  190 tcagtctctg 199  Q
     | |||||||    
T  16502097 ccggtctctg 16502106  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 26534514 - 26534417
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 191  Q
    |||||||||||||||||||||| |||| |||||||||||| |||  || ||||||  ||||||||||| |||||||| | | ||| ||||||||||||||    
T  26534514 gggtgatgtccttttgggtgtttattgcaggggtgtctttgttg--gtattgttttcaggtgttccgcctatatacgacgccttttgtttgtacttcatc 26534417  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 6946948 - 6946858
Alignment:
Q  98 tgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 188  Q
    ||||||| ||||||||||| | | |||||||||| ||||||||||||||    |||||||   |||||||||| | ||| |||||||||||    
T  6946948 tgtccttatgggtgttgatcgcaagggtgtctttgttggtgttttgttttcgagtgttccatctatatacggcgccttttgtttgtacttc 6946858  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 33753629 - 33753734
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 191  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||| ||| ||||||||| |  |||||||||||  ||| |||||||| ||| |    
T  33753629 gggtgatgtccttttgggtgttgatcgcaggg-tgtctctattggtgttttatttttaggtgttctgtctatatacggcatcttttgtttgtacctcacc 33753727  T
Q  192 agtctct 198  Q
     ||||||    
T  33753728 ggtctct 33753734  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 22948480 - 22948432
Alignment:
Q  122 gggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 170  Q
    |||||||||| ||||||||||||||  ||||||||||| ||||||||||    
T  22948480 gggtgtctttgttggtgttttgttttcaggtgttccgcatatatacggc 22948432  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 22948397 - 22948318
Alignment:
Q  106 tgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 185  Q
    ||||||||||| | | |||||||||| ||||||||||||||  |||||||| ||||||| | ||||| ||| | ||||||    
T  22948397 tgggtgttgatcgcatgggtgtctttgttggtgttttgttttcaggtgttctgcttataaatggcaccttttggttgtac 22948318  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 38489083 - 38489168
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgtttt-gtttataggtgttccgcttatatacggcacattt 176  Q
    ||||| ||| ||||||||||||||| | | || ||||||| ||||  |||| ||||| ||||||||||| ||||||||||| ||||    
T  38489083 gggtgttgttcttttgggtgttgatcgcatggatgtctttgttgggattttcgtttacaggtgttccgcctatatacggcatattt 38489168  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 29044067 - 29043993
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatac 167  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||||  ||||||||||| |||||||    
T  29044067 gggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggt-ttttgttttcaggtgttccgcctatatac 29043993  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 10176567 - 10176597
Alignment:
Q  60 agattacctttaaagaatggtgggtaactta 90  Q
    |||||||||||||||||||||||||||||||    
T  10176567 agattacctttaaagaatggtgggtaactta 10176597  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 27028464 - 27028535
Alignment:
Q  97 atgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacg 168  Q
    |||||||||||||||||||| | | || |||||||||  ||||||||||| |||||||||| | ||||||||    
T  27028464 atgtccttttgggtgttgatcgcatggatgtctttatcagtgttttgtttttaggtgttccacctatatacg 27028535  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 9350010 - 9350087
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 170  Q
    ||||| ||||||| |||| |||||||| |||||||||||| |||||| ||| |||  ||||||||||| ||||||||||    
T  9350010 gggtgttgtccttatgggggttgattgcaggggtgtctttgttggtgattt-tttccaggtgttccgcctatatacggc 9350087  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 30235900 - 30235808
Alignment:
Q  92 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 185  Q
    ||||| ||||||||||||||||||| | | |||||||||| |||||| |||||||   | |||||||| |||||||||  | ||||||||||||    
T  30235900 gggtgttgtccttttgggtgttgatcgcaagggtgtctttgttggtg-tttgttttcggatgttccgcctatatacggagcctttagtttgtac 30235808  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 39901582 - 39901612
Alignment:
Q  60 agattacctttaaagaatggtgggtaactta 90  Q
    |||||||||||||||||||||||||||||||    
T  39901582 agattacctttaaagaatggtgggtaactta 39901612  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 29938987 - 29938945
Alignment:
Q  124 gtgtctttattggtgttttgtttataggtgttccgcttatata 166  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  29938987 gtgtctttgttggtgttttgtttttaggtgttccgcctatata 29938945  T

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