View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9296_low_4 (Length: 475)

Name: NF9296_low_4
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9296_low_4
NF9296_low_4
[»] chr5 (3 HSPs)
chr5 (216-467)||(28384979-28385230)
chr5 (18-218)||(28384750-28384950)
chr5 (217-466)||(12540331-12540580)
[»] chr7 (1 HSPs)
chr7 (272-467)||(3417810-3418005)
[»] chr2 (3 HSPs)
chr2 (231-467)||(13439859-13440096)
chr2 (291-467)||(13448083-13448259)
chr2 (216-467)||(13454478-13454730)
[»] chr4 (5 HSPs)
chr4 (274-462)||(48960994-48961182)
chr4 (286-461)||(48965044-48965219)
chr4 (290-465)||(48967177-48967352)
chr4 (325-455)||(48957898-48958028)
chr4 (336-461)||(48912634-48912759)
[»] chr8 (1 HSPs)
chr8 (272-455)||(12641776-12641959)
[»] chr6 (1 HSPs)
chr6 (324-464)||(12590455-12590595)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 216 - 467
Target Start/End: Original strand, 28384979 - 28385230
Alignment:
Q  216 gacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgattaatcatgtggtttgctgtctctcaatcttttaagttcgtcg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28384979 gacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgattaatcatgtggtttgctgtctctcaatcttttaagttcgtcg 28385078  T
Q  316 attaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagctt 415  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28385079 attaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagctt 28385178  T
Q  416 catcgccaccgtccatcaatctcctcatagccttctctatgttatctctgct 467  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28385179 catcgccaccgtccatcaatttcctcatagccttctctatgttatctctgct 28385230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 28384750 - 28384950
Alignment:
Q  18 tcaacatatttactaatgttacagaataaaataaaatataatatacatcttctttcacaaagaaaatacatttattactgcttcaacgtagtaccacagt 117  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28384750 tcaacatagttactaatgttacagaataaaataaaatataaaatacatcttctttcacaaagaaaatacatttattactgcttcaacgtagtaccacagt 28384849  T
Q  118 gaaaattgaaatatgcaatgataagtaaaacaaaatcatcgactgaaatcctgaaaacagcaaagcatttttatgctagtattcaatagaaattcatcga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28384850 gaaaattgaaatatgcaatgataagtaaaacaaaatcatcgactgaaatcctgaaaacagcaaagcatttttatgctagtattcaatagaaattcatcga 28384949  T
Q  218 c 218  Q
    |    
T  28384950 c 28384950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 217 - 466
Target Start/End: Original strand, 12540331 - 12540580
Alignment:
Q  217 acgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgattaatcatgtggtttgctgtctctcaatcttttaagttcgtcga 316  Q
    |||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||| ||||||||||||| |||| |||||| |||||||||| ||||||||    
T  12540331 acgaaacaacgacgttattaggataaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcga 12540430  T
Q  317 ttaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagcttc 416  Q
    | |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||| |||||| ||||||||| |||||||||    
T  12540431 tcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttc 12540530  T
Q  417 atcgccaccgtccatcaatctcctcatagccttctctatgttatctctgc 466  Q
    ||  ||||| ||||||||||||||||||||||||||||||  ||||||||    
T  12540531 ataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 272 - 467
Target Start/End: Complemental strand, 3418005 - 3417810
Alignment:
Q  272 attaatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagc 371  Q
    |||||||| |||| |||| |||||||||  |||||||||||||||| |||| ||||||||||| ||| |||||||||||||||| || ||||||| ||||    
T  3418005 attaatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagc 3417906  T
Q  372 cttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctatgttatctctgct 467  Q
    ||||||||| | ||||||||||||| ||||||||  |||||| ||||| | || |||||||||||||||||| ||||||||||||| |||||||||    
T  3417905 cttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgct 3417810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 231 - 467
Target Start/End: Original strand, 13439859 - 13440096
Alignment:
Q  231 ttattaggataagttcaaaaaactcataccatattcatttga-ttaatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaa 329  Q
    ||||||||||| ||| |||||||  | || ||| || ||||| |||||||||| | |||  ||||||||||||||||||||| || |||||||| |||||    
T  13439859 ttattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaatcttttaagttcttcaattaaagccaacaa 13439958  T
Q  330 attattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccaccgtcc 429  Q
    |||||||| ||| || |||||||||| || |||| |||||||||| ||||| |||||| ||||| || | ||||||| || ||||||||| |||   |||    
T  13439959 attattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctcc 13440058  T
Q  430 atcaatctcctcatagccttctctatgttatctctgct 467  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13440059 atcaatctcctcacagccttctctatgttatccctgct 13440096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 13448083 - 13448259
Alignment:
Q  291 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 390  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||| ||| || |||||||||| || |||| || |||| || ||||| |||||||||    
T  13448083 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcga 13448182  T
Q  391 gcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctatgttatctctgct 467  Q
    |||||| | || |||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||    
T  13448183 gcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgct 13448259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 216 - 467
Target Start/End: Original strand, 13454478 - 13454730
Alignment:
Q  216 gacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttga-ttaatcatgtggtttgctgtctctcaatcttttaagttcgtc 314  Q
    ||||||||||| | |||||||| | ||||| |||||||| | || ||  || ||||| ||||||||| || |||  || |||||||||||||||||| ||    
T  13454478 gacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatcttttaagttcatc 13454577  T
Q  315 gattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagct 414  Q
     || ||||| ||||||||||||| ||| || ||||||| || || |||| |||||||||| ||||| |||||||||||||||   || |||| || ||||    
T  13454578 aatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagct 13454677  T
Q  415 tcatcgccaccgtccatcaatctcctcatagccttctctatgttatctctgct 467  Q
    ||||| |||||| ||||||||||||||| ||||||||||||| ||||| ||||    
T  13454678 tcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgct 13454730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 462
Target Start/End: Original strand, 48960994 - 48961182
Alignment:
Q  274 taatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagcct 373  Q
    |||||| |||| || |||||||||||||||||||| || || |||||||| ||||||||||||||||| || || ||| ||| |||||||| | ||||||    
T  48960994 taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagcct 48961093  T
Q  374 tctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctatgttatct 462  Q
    | || || ||||||||||||||  |||| |||| ||| |||||||| ||||||||||| ||| | ||||  ||||||||||| ||||||    
T  48961094 tatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatct 48961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 286 - 461
Target Start/End: Original strand, 48965044 - 48965219
Alignment:
Q  286 ttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaact 385  Q
    ||||| |||||||||||||| || || || || || ||||||||||| |||||||| || |||||||||| ||  |||||| ||||||| ||||| ||||    
T  48965044 ttgctatctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaact 48965143  T
Q  386 ctcgagcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctatgttatc 461  Q
    || |||||||   ||| || |  ||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||    
T  48965144 cttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 290 - 465
Target Start/End: Original strand, 48967177 - 48967352
Alignment:
Q  290 tgtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcg 389  Q
    ||||||||| ||||||||| || || || ||||| |  |||||||||| |||  | |||||||||| ||  |||||||||||||| ||||| || |||||    
T  48967177 tgtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcg 48967276  T
Q  390 agcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctatgttatctctg 465  Q
    |||||||||||| || |  |||||||||||| ||  |||||||||||| || ||||| ||||||||||||||||||    
T  48967277 agcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 325 - 455
Target Start/End: Original strand, 48957898 - 48958028
Alignment:
Q  325 aacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccac 424  Q
    |||||||| |||||||| || |||||||||| |||||||||||||||||| ||||| |||||| ||||||| ||| | || |  ||||||||||| ||||    
T  48957898 aacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccac 48957997  T
Q  425 cgtccatcaatctcctcatagccttctctat 455  Q
    |||||||||||||| ||| |||||| |||||    
T  48957998 cgtccatcaatctcttcacagccttttctat 48958028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 48912759 - 48912634
Alignment:
Q  336 atgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccaccgtccatcaat 435  Q
    |||||| ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || |  ||||||||||| |||| ||||||||||    
T  48912759 atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat 48912660  T
Q  436 ctcctcatagccttctctatgttatc 461  Q
    | | ||| | ||||||| || |||||    
T  48912659 cgcttcacaaccttctcaatattatc 48912634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 272 - 455
Target Start/End: Complemental strand, 12641959 - 12641776
Alignment:
Q  272 attaatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattatgagaggaaccaccttctttaacagctcgtgtagc 371  Q
    |||| ||| ||||||||| ||||||| |||||||||| ||||  || ||||| |||||||| |||||||| || || ||||||| ||||||  |||||||    
T  12641959 attattcaagtggtttgcggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagc 12641860  T
Q  372 cttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgccaccgtccatcaatctcctcatagccttctctat 455  Q
    ||| |  || |||||| ||||||||||||| || |  | ||||||||| ||| |||||||||||||||||| ||| ||||||||    
T  12641859 ctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctat 12641776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 464
Target Start/End: Complemental strand, 12590595 - 12590455
Alignment:
Q  324 taacaaattattatgagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatatattcagcttcatcgcca 423  Q
    |||||||||||||| |||||| ||||||| || ||||||| || |||| || || ||||||||| ||  |||| |||| || |  |||||||||  ||||    
T  12590595 taacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgcca 12590496  T
Q  424 ccgtccatcaatctcctcatagccttctctatgttatctct 464  Q
    || ||||||||||| |||| ||| |||| |||| |||||||    
T  12590495 ccatccatcaatcttctcacagcattctttatgctatctct 12590455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University