View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9296_low_5 (Length: 468)
Name: NF9296_low_5
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 39929033 - 39929203
Alignment:
| Q |
9 |
aatgatatgaataatctcccatgttccataggttccacactatctattcttattttttattaagcatatagcaggtgacattatttgttataattgttca |
108 |
Q |
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| T |
39929033 |
aatgatatgaataatctcccatgttccataggtaccacactatctattcttattttttattaagcatatagcaggtgacattatttgttataattgttca |
39929132 |
T |
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| Q |
109 |
agtatttattggagactatacatcactcattcactaaatataacaatcaaatctcccccaccaccacaccc |
179 |
Q |
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| T |
39929133 |
agtatttattggagactatacatcactcattcactaaatataacaatcaaatctcccccaccaccacaccc |
39929203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 245 - 452
Target Start/End: Original strand, 39929269 - 39929496
Alignment:
| Q |
245 |
ctgtagctatgagttatcaatttcacctgtagatgtatgcagcatttatcatggtaccatgaagcttttctgttcattgaaaggtaagtgtggtccataa |
344 |
Q |
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| T |
39929269 |
ctgtagctatgagttatcaatttcacctgtagatgtatgcagcatttatcatggtaccatgaagcttttatgttcattgaaagttaagtgtggtccataa |
39929368 |
T |
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| Q |
345 |
ggttgaatcctgaagttagagtggatggctgtgattcatgcac---------------------tattatacaccactcattcaagggaccaatttctgt |
423 |
Q |
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| T |
39929369 |
ggttgaatcctgaagttagagtggatggctgtgattcatgcactattctctttttggacattaatattatacaccactcattcaagggaccaatttctg- |
39929467 |
T |
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| Q |
424 |
tttgtgtgacactgacttattcatgcatg |
452 |
Q |
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| T |
39929468 |
tttgtgtgacactgacttattcatgcatg |
39929496 |
T |
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