View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9296_low_7 (Length: 396)
Name: NF9296_low_7
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9296_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 8947102 - 8946732
Alignment:
| Q |
10 |
ggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaatt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
8947102 |
ggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaatt |
8947003 |
T |
|
| Q |
110 |
catcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8947002 |
catcattttgcaacaagaaactcattggagcaagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacg |
8946903 |
T |
|
| Q |
210 |
tgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaagggga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946902 |
tgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaagggga |
8946803 |
T |
|
| Q |
310 |
atagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttc |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8946802 |
atagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccaattgcaatttc |
8946732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 8961991 - 8962295
Alignment:
| Q |
10 |
ggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaatt |
109 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
8961991 |
ggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaataccaacaatt |
8962090 |
T |
|
| Q |
110 |
catcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacg |
209 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||| ||||| | |||| ||||||||| ||||||| ||||||| |
|
|
| T |
8962091 |
catctttttgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccaccattgatacaacaacagtgaactctacacg |
8962190 |
T |
|
| Q |
210 |
tgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaagggga |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | ||| || ||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
8962191 |
tgacacagatggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattcttcggttatgcaaatggaacagcaagagga |
8962290 |
T |
|
| Q |
310 |
atagc |
314 |
Q |
| |
|
||||| |
|
|
| T |
8962291 |
atagc |
8962295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 8973393 - 8973736
Alignment:
| Q |
10 |
ggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaatt |
109 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||| ||| || |||| |||||||||||||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
8973393 |
ggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaatt |
8973492 |
T |
|
| Q |
110 |
catcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacg |
209 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | || ||| || | || | | || ||||| ||||| | ||||| |
|
|
| T |
8973493 |
catctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactccacacg |
8973592 |
T |
|
| Q |
210 |
tgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaagggga |
309 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
8973593 |
tgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattctttggttatgcaaacggaacagcaagagga |
8973692 |
T |
|
| Q |
310 |
atagctacattgtctagagtgtctatgtacaagattgtgtgggg |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
8973693 |
atagctacattgtctagagtagctatgtacaagactgcgtgggg |
8973736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 345
Target Start/End: Complemental strand, 9950244 - 9950079
Alignment:
| Q |
180 |
cattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttc |
279 |
Q |
| |
|
||||||||||||||| ||||| |||||| || | ||| ||| | | | |||||||||||| |||| || | ||||||||||||||||||||| |||| |
|
|
| T |
9950244 |
cattaatacaacaattgtgaatactacatgtcatacatatgattaagagacccacacttcattaacaacaacttgaaatcaagttgatggtgcatttttc |
9950145 |
T |
|
| Q |
280 |
tttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagatt |
345 |
Q |
| |
|
|||||||||| |||| |||| ||| | |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
9950144 |
tttggttatgtaaatcgaactacaaaagaaataattacattgtctagagtagctatgtacaagatt |
9950079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 8957087 - 8957140
Alignment:
| Q |
105 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaataaagg |
158 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||| ||||| |
|
|
| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaagg |
8957140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 8957197 - 8957270
Alignment:
| Q |
218 |
atggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgca |
291 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| ||||| |||||||| ||| || || |||||||||||| |
|
|
| T |
8957197 |
atggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattttttggttatgca |
8957270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 21688254 - 21687897
Alignment:
| Q |
9 |
tggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaaca-- |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| ||| |||||| |
|
|
| T |
21688254 |
tggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttgagaattccaacatc |
21688155 |
T |
|
| Q |
107 |
----------attcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatag |
196 |
Q |
| |
|
||| ||| || |||||||||||||||||||||||||| |||||||| ||||| || | || ||| | || ||||||| ||||||||| |
|
|
| T |
21688154 |
cagtcaatcaatttatctttgtgcaacaagaaactcattggagctaggttcttcaacaaaggcttcttggcaaaacactccaacattagtacaacaattt |
21688055 |
T |
|
| Q |
197 |
tgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatgg |
296 |
Q |
| |
|
||||| | |||||||||||||| ||||| || || || ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21688054 |
tgaactccacacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttctttggctatgcaaatgg |
21687955 |
T |
|
| Q |
297 |
aacggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtgggga |
354 |
Q |
| |
|
||| ||||| || |||||| ||| ||||||||| |||| ||||||| || ||||||| |
|
|
| T |
21687954 |
aacagcaagaggtatagcttcatcgtctagagtagctatatacaagactgcgtgggga |
21687897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 34963843 - 34963779
Alignment:
| Q |
13 |
gtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
77 |
Q |
| |
|
|||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34963843 |
gtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 34963754 - 34963707
Alignment:
| Q |
105 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaa |
152 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34963754 |
caattcatctctttgcaacaagaaactcattggagctaaattcttcaa |
34963707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 34963657 - 34963572
Alignment:
| Q |
205 |
acacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgc |
290 |
Q |
| |
|
|||||||||||| | ||||||||||| || ||||||||||||||||| |||| |||||| |||||| |||||||||||||| |
|
|
| T |
34963657 |
acacgtgacacagaaggtcatggaactcatacttcaacaacagcagctggaagcagagttgaccatgcatcattctttggttatgc |
34963572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University