View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9296_low_9 (Length: 359)

Name: NF9296_low_9
Description: NF9296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9296_low_9
NF9296_low_9
[»] chr1 (2 HSPs)
chr1 (22-349)||(28843812-28844139)
chr1 (123-169)||(42180144-42180190)
[»] chr3 (2 HSPs)
chr3 (123-162)||(8156217-8156256)
chr3 (123-169)||(29067288-29067334)
[»] scaffold0115 (1 HSPs)
scaffold0115 (123-163)||(35144-35184)
[»] chr2 (1 HSPs)
chr2 (113-169)||(1404777-1404833)
[»] chr7 (3 HSPs)
chr7 (123-169)||(21846504-21846550)
chr7 (123-169)||(27221422-27221468)
chr7 (123-163)||(5058533-5058573)
[»] chr6 (2 HSPs)
chr6 (123-169)||(7918460-7918506)
chr6 (123-169)||(17543819-17543865)
[»] chr5 (2 HSPs)
chr5 (123-169)||(19042468-19042514)
chr5 (123-169)||(43234872-43234918)
[»] chr4 (1 HSPs)
chr4 (124-169)||(46664436-46664481)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 28844139 - 28843812
Alignment:
Q  22 aagaacccacatgcatatgcatccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcacaaaacaacattgataatcatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28844139 aagaacccacatgcatatgcatccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcacaaaacaacattgataatcatc 28844040  T
Q  122 tttgtcaaaatctcaacttaaattctaaaattcagaattttgtgacttgactcgtgcacgttatgacatctctctttaaacttaaaggttacaaattaat 221  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28844039 tttgtcagaatcttaacttaaattctaaaatttagaattttgtgacttgactcgtgcacgttatgacctctctctttaagcttaaaggttacaaattaat 28843940  T
Q  222 catcacccctttgagccaattttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgtttctctaaactttgacatttg 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28843939 catcacccctttgagccaattttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgttcctctaaactttgacatttg 28843840  T
Q  322 tactacttcataccataaaatagtatta 349  Q
    ||||||| ||||||||||||||||||||    
T  28843839 tactactccataccataaaatagtatta 28843812  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 42180190 - 42180144
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactt 42180144  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 8156256 - 8156217
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaatttt 162  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  8156256 ttgtcaaaatcccaacttaaattctaaaattcagaatttt 8156217  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 29067288 - 29067334
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  29067288 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 29067334  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 35184 - 35144
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttg 163  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttg 35144  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 1404777 - 1404833
Alignment:
Q  113 ataatcatctttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||  ||||||||||| | ||||||||||||||||| || ||||||||||||    
T  1404777 ataatcattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactt 1404833  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 21846550 - 21846504
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 21846504  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 27221422 - 27221468
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    |||| |||||| |||||||||||||||||||||| |||||| |||||    
T  27221422 ttgttaaaatcccaacttaaattctaaaattcaggattttgcgactt 27221468  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 5058533 - 5058573
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttg 163  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttg 5058573  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 7918506 - 7918460
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 7918460  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 17543865 - 17543819
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||||| |||||||| ||||||||||| |||||| |||||    
T  17543865 ttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgactt 17543819  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 19042514 - 19042468
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| ||||||||||||||||||| |  ||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactt 19042468  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 43234872 - 43234918
Alignment:
Q  123 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||||| |||||||||| ||||||||||| |||||| |||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactt 43234918  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 46664481 - 46664436
Alignment:
Q  124 tgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 169  Q
    ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  46664481 tgtcaaaatttcaacttaaatcttaaaattcagaattttgcgactt 46664436  T

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