View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9297_low_10 (Length: 362)

Name: NF9297_low_10
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9297_low_10
NF9297_low_10
[»] chr1 (24 HSPs)
chr1 (120-352)||(38219790-38220022)
chr1 (20-55)||(38220087-38220122)
chr1 (203-263)||(25006078-25006135)
chr1 (209-269)||(27738230-27738287)
chr1 (211-269)||(30371111-30371166)
chr1 (286-325)||(2194486-2194525)
chr1 (271-322)||(4700193-4700244)
chr1 (209-270)||(5592735-5592793)
chr1 (212-269)||(7218127-7218181)
chr1 (289-320)||(34278804-34278835)
chr1 (209-269)||(28467357-28467414)
chr1 (284-318)||(34619519-34619553)
chr1 (192-230)||(37842388-37842426)
chr1 (239-269)||(46499931-46499961)
chr1 (284-326)||(48064180-48064222)
chr1 (209-269)||(49517033-49517090)
chr1 (284-317)||(4920907-4920940)
chr1 (197-230)||(26779963-26779996)
chr1 (237-269)||(3062963-3062995)
chr1 (238-270)||(4548683-4548715)
chr1 (197-267)||(24915089-24915156)
chr1 (284-324)||(27820497-27820536)
chr1 (212-270)||(30257645-30257700)
chr1 (272-323)||(35058900-35058952)
[»] chr6 (9 HSPs)
chr6 (209-265)||(4006681-4006734)
chr6 (209-269)||(2514665-2514722)
chr6 (231-269)||(7713988-7714026)
chr6 (232-269)||(29274299-29274336)
chr6 (241-269)||(5551425-5551453)
chr6 (237-269)||(8349739-8349771)
chr6 (237-269)||(9582673-9582705)
chr6 (203-265)||(24626262-24626321)
chr6 (204-270)||(29296338-29296401)
[»] chr2 (14 HSPs)
chr2 (209-269)||(11513861-11513918)
chr2 (209-267)||(43299452-43299508)
chr2 (209-269)||(10143135-10143192)
chr2 (209-268)||(5043610-5043666)
chr2 (232-269)||(6546941-6546978)
chr2 (209-253)||(13056113-13056158)
chr2 (210-269)||(33942113-33942169)
chr2 (197-271)||(12464511-12464582)
chr2 (211-270)||(32757514-32757576)
chr2 (241-269)||(40758986-40759014)
chr2 (284-320)||(41702342-41702378)
chr2 (243-271)||(41851246-41851274)
chr2 (199-269)||(43141834-43141901)
chr2 (197-229)||(44590034-44590066)
[»] chr7 (17 HSPs)
chr7 (197-267)||(12110325-12110392)
chr7 (209-269)||(1417227-1417284)
chr7 (269-325)||(12110248-12110305)
chr7 (232-269)||(12835007-12835044)
chr7 (232-269)||(23918920-23918957)
chr7 (237-270)||(46825060-46825093)
chr7 (242-270)||(946714-946742)
chr7 (207-269)||(9527138-9527197)
chr7 (199-269)||(17989063-17989130)
chr7 (284-320)||(25595983-25596019)
chr7 (203-269)||(27548226-27548289)
chr7 (237-269)||(30456525-30456557)
chr7 (237-269)||(31338471-31338503)
chr7 (272-319)||(34672893-34672941)
chr7 (237-269)||(39591542-39591574)
chr7 (215-269)||(45813236-45813287)
chr7 (237-269)||(46531496-46531528)
[»] chr3 (12 HSPs)
chr3 (207-269)||(48397609-48397668)
chr3 (209-269)||(1816546-1816603)
chr3 (285-319)||(30574070-30574104)
chr3 (197-269)||(30956664-30956733)
chr3 (197-269)||(30972476-30972545)
chr3 (209-269)||(31337451-31337508)
chr3 (197-269)||(33405205-33405274)
chr3 (286-320)||(43079650-43079684)
chr3 (242-271)||(3182442-3182471)
chr3 (232-269)||(42808942-42808979)
chr3 (283-319)||(19679461-19679497)
chr3 (285-317)||(31762206-31762238)
[»] chr8 (10 HSPs)
chr8 (209-269)||(34770855-34770912)
chr8 (283-320)||(31751712-31751749)
chr8 (209-267)||(6509353-6509408)
chr8 (284-323)||(32976304-32976343)
chr8 (272-317)||(6526369-6526414)
chr8 (241-270)||(39881826-39881855)
chr8 (232-269)||(45071165-45071202)
chr8 (284-324)||(1112735-1112775)
chr8 (241-269)||(14482165-14482193)
chr8 (237-269)||(28784870-28784902)
[»] chr5 (12 HSPs)
chr5 (201-265)||(34205206-34205267)
chr5 (286-323)||(11715018-11715055)
chr5 (203-265)||(18857444-18857503)
chr5 (284-319)||(42573936-42573971)
chr5 (284-322)||(6593175-6593213)
chr5 (197-269)||(9202786-9202855)
chr5 (210-269)||(10272482-10272538)
chr5 (232-269)||(32969187-32969224)
chr5 (285-317)||(5559610-5559642)
chr5 (284-320)||(29845054-29845090)
chr5 (284-320)||(38105020-38105056)
chr5 (209-269)||(40534159-40534219)
[»] chr4 (16 HSPs)
chr4 (203-267)||(2996538-2996599)
chr4 (198-269)||(51630074-51630142)
chr4 (209-263)||(7368105-7368157)
chr4 (285-320)||(19039658-19039693)
chr4 (271-317)||(20936357-20936404)
chr4 (289-320)||(46201276-46201307)
chr4 (284-323)||(54214889-54214928)
chr4 (197-269)||(47119003-47119072)
chr4 (209-269)||(30024663-30024726)
chr4 (209-267)||(13949894-13949949)
chr4 (237-273)||(19429563-19429599)
chr4 (237-269)||(46013375-46013407)
chr4 (237-269)||(46247181-46247213)
chr4 (284-320)||(47399411-47399447)
chr4 (199-269)||(49219102-49219169)
chr4 (193-229)||(52734803-52734839)
[»] scaffold0024 (1 HSPs)
scaffold0024 (203-267)||(27541-27602)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 120 - 352
Target Start/End: Complemental strand, 38220022 - 38219790
Alignment:
Q  120 catcaacccacatttaaagacgtattaaacagcttatgagtgatgacatattcataagctgttttcttaatatatatgttcttcaagagagcttatgaaa 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220022 catcaatccacatttaaagacgtattaaacagcttatgagtgatgacatattcataagctgttttcttaatatatatgttcttcaagagagcttatgaaa 38219923  T
Q  220 acaacttatagaagctcatataaaaacaatttgactttattttatctttttcataagtgcttaactataagctgcaaattaaggtgtttatccaaacagg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38219922 acaacttatagaagctcatataaaaacaatttgactttattttatctttttcataagtgcttagctataagctgcaaattaagatgtttatccaaacagg 38219823  T
Q  320 gtctaagaagatgagaatgaataataagaatta 352  Q
    |||||||||||||||||||||||||||||||||    
T  38219822 gtctaagaagatgagaatgaataataagaatta 38219790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 38220122 - 38220087
Alignment:
Q  20 ccctggtactgctacagactacatgtgacttcccct 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  38220122 ccctggtactgctacagactacatgtgacttcccct 38220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 25006078 - 25006135
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttatttta 263  Q
    ||||| ||||||||||||||||||||   |||| |||| ||||||||||||||||||||||    
T  25006078 caagatagcttatgaaaacaacttat---agcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 27738230 - 27738287
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||| ||||||   || |||| ||||||||||||||||||||||||||||    
T  27738230 agcttatgaaaacaaattatag---cttatatgaaaacaatttgactttattttatctttt 27738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 30371166 - 30371111
Alignment:
Q  211 cttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||||||||   || |||| |||||||||||| |||||||||||||||    
T  30371166 cttatgaaaacaacttatag---cttatatgaaaacaatttgagtttattttatctttt 30371111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 2194486 - 2194525
Alignment:
Q  286 ataagctgcaaattaaggtgtttatccaaacagggtctaa 325  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  2194486 ataagctgcaaattaagctgtttatccaaacagggcctaa 2194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 4700193 - 4700244
Alignment:
Q  271 cataagtgcttaactataagctgcaaattaaggtgtttatccaaacagggtc 322  Q
    ||||||||||||  || ||||||||||||||| |||| ||||||||||||||    
T  4700193 cataagtgcttatgtaaaagctgcaaattaagttgttaatccaaacagggtc 4700244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 5592735 - 5592793
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 270  Q
    ||||||||||||||||||||||   || |||| | ||||||| |||||||||||||||||||    
T  5592735 agcttatgaaaacaacttatag---cttatatgacaacaattcgactttattttatcttttt 5592793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 7218127 - 7218181
Alignment:
Q  212 ttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||   || |||| |||||||||||||||||||||| |||||    
T  7218127 ttatgaaaacaacttatag---cttatatgaaaacaatttgactttattttacctttt 7218181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 34278804 - 34278835
Alignment:
Q  289 agctgcaaattaaggtgtttatccaaacaggg 320  Q
    ||||||||||||||||||||||||||||||||    
T  34278804 agctgcaaattaaggtgtttatccaaacaggg 34278835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 28467357 - 28467414
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||| |||   || |||| |||| |||||||||||||||||||||||    
T  28467357 agcttatgaaaacaacttgtag---cttatatgaaaataatttgactttattttatctttt 28467414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 34619519 - 34619553
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacag 318  Q
    ||||||||||||||||||| |||||||||||||||    
T  34619519 ctataagctgcaaattaagctgtttatccaaacag 34619553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 37842388 - 37842426
Alignment:
Q  192 tatatgttcttcaagagagcttatgaaaacaacttatag 230  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  37842388 tataagttcttcaagatagcttatgaaaacaacttatag 37842426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 269
Target Start/End: Original strand, 46499931 - 46499961
Alignment:
Q  239 ataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||||||||||||    
T  46499931 ataaaaacaatttgactttattttatctttt 46499961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 48064222 - 48064180
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtctaag 326  Q
    ||||||||||||||||||| |||||||||||||| || |||||    
T  48064222 ctataagctgcaaattaagttgtttatccaaacatggcctaag 48064180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 49517090 - 49517033
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||| |||||||   || | || ||||||||||||||||||||||||||||    
T  49517090 agcttatgaaaacagcttatag---cttaaatgaaaacaatttgactttattttatctttt 49517033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 4920907 - 4920940
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaaca 317  Q
    ||||||||||||||||||| ||||||||||||||    
T  4920907 ctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 26779963 - 26779996
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatag 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  26779963 gttcttcaagatagcttatgaaaacaacttatag 26779996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 3062995 - 3062963
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||| ||||||||||||||    
T  3062995 atataaaaacaatttgacattattttatctttt 3062963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 4548715 - 4548683
Alignment:
Q  238 tataaaaacaatttgactttattttatcttttt 270  Q
    |||||||||| ||||||||||||||||||||||    
T  4548715 tataaaaacagtttgactttattttatcttttt 4548683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 24915089 - 24915156
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    ||||| ||||| |||||||||||||| ||||||| |    ||| ||||||||||| |||||||||||||||    
T  24915089 gttctccaagacagcttatgaaaacagcttatagcat---atacaaaaacaatttaactttattttatctt 24915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 27820497 - 27820536
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtcta 324  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  27820497 ctataagctgcaaat-aagttgtttatccaaacagggtcta 27820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 30257700 - 30257645
Alignment:
Q  212 ttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 270  Q
    ||||||||||||||||   ||||| ||||  ||||| ||||||||||||||||||||||    
T  30257700 ttatgaaaacaactta---aagcttatatggaaacagtttgactttattttatcttttt 30257645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 35058900 - 35058952
Alignment:
Q  272 ataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagggtct 323  Q
    |||||||||||  ||||||| |||||| |||| ||||||||||||||||||||    
T  35058900 ataagtgcttatgctataagttgcaaaataagctgtttatccaaacagggtct 35058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 4006734 - 4006681
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 265  Q
    ||||||||||||||||||||||   || |||||||||||||||||||||||||||||    
T  4006734 agcttatgaaaacaacttatag---cttatataaaaacaatttgactttattttatc 4006681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 2514722 - 2514665
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||| |||||||||   |||||||||||  | |||||||||||||||||||||    
T  2514722 agcttatgaaaataacttatag---ctcatataaaattagtttgactttattttatctttt 2514665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 7714026 - 7713988
Alignment:
Q  231 aagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  7714026 aagcttatatgaaaacaatttgactttattttatctttt 7713988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 29274299 - 29274336
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  29274299 agcttatatgaaaacaatttgactttattttatctttt 29274336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 5551453 - 5551425
Alignment:
Q  241 aaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||||||||||    
T  5551453 aaaaacaatttgactttattttatctttt 5551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 8349739 - 8349771
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||| |||||||||||||||||    
T  8349739 atataaaaacaatttaactttattttatctttt 8349771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 9582673 - 9582705
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||| |||||||||||||||||    
T  9582673 atataaaaacaatttcactttattttatctttt 9582705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 24626321 - 24626262
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 265  Q
    ||||| ||||||||||||||||||||||||    ||| ||||||||||| ||||| |||||||    
T  24626321 caagatagcttatgaaaacaacttatagaa---tatacaaaaacaatttaactttgttttatc 24626262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 29296338 - 29296401
Alignment:
Q  204 aagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 270  Q
    ||||||||||| |||||||||||||   | || ||| ||||| ||||| ||||||||||||||||||    
T  29296338 aagagagcttaagaaaacaacttat---accttatacaaaaataatttaactttattttatcttttt 29296401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 11513918 - 11513861
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||||||||||   || |||| ||||||||||||||||||||||||||||    
T  11513918 agcttatgaaaacaacttatag---cttatatgaaaacaatttgactttattttatctttt 11513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 43299452 - 43299508
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    |||||||||||||||||||||||   | ||| ||||||| |||||||||||||||||||    
T  43299452 agcttatgaaaacaacttataga--tttatacaaaaacagtttgactttattttatctt 43299508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 10143192 - 10143135
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||| |||||||||   || ||||||||||| |||||||| ||||||||||||    
T  10143192 agcttatgaaaaaaacttatag---cttatataaaaacagtttgacttaattttatctttt 10143135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 5043610 - 5043666
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttt 268  Q
    |||||||||||||||||| |||   || |||| |||||| ||||||||||||||||||||    
T  5043610 agcttatgaaaacaacttctag---cttatatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 6546978 - 6546941
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  6546978 agcttatatataaacaatttgactttattttatctttt 6546941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 13056158 - 13056113
Alignment:
Q  209 agcttatgaaaacaacttatag-aagctcatataaaaacaatttga 253  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||    
T  13056158 agcttatgaaaacaacttatagcaagcttatatgaaaacaatttga 13056113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 33942169 - 33942113
Alignment:
Q  210 gcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||   || | || |||||| |||||||||||||||||||||    
T  33942169 gcttatgaaaacaacttatag---cttacatgaaaacagtttgactttattttatctttt 33942113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 12464511 - 12464582
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttttc 271  Q
    ||||| ||||| |||||||||||| | ||||||| |    ||| ||||||||||| |||||||||||||||||||    
T  12464511 gttctccaagatagcttatgaaaatagcttatagcat---atacaaaaacaatttaactttattttatctttttc 12464582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 32757514 - 32757576
Alignment:
Q  211 cttatgaaaacaacttataga---agctcatataaaaacaatttgactttattttatcttttt 270  Q
    ||||||||||||||||||||    |||| ||||||||| ||||||| || |||||||||||||    
T  32757514 cttatgaaaacaacttatagttatagcttatataaaaagaatttgatttgattttatcttttt 32757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 40759014 - 40758986
Alignment:
Q  241 aaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||||||||||    
T  40759014 aaaaacaatttgactttattttatctttt 40758986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 41702342 - 41702378
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    |||||||||| |||||||| |||||||||||||||||    
T  41702342 ctataagctgaaaattaagctgtttatccaaacaggg 41702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 41851246 - 41851274
Alignment:
Q  243 aaacaatttgactttattttatctttttc 271  Q
    |||||||||||||||||||||||||||||    
T  41851246 aaacaatttgactttattttatctttttc 41851274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 43141901 - 43141834
Alignment:
Q  199 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||| || |||||||||||||| |||||||   || ||||  |||||||||||||||| ||||||||||    
T  43141901 tcttcaggatagcttatgaaaacatcttatag---cttatatggaaacaatttgactttactttatctttt 43141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 44590066 - 44590034
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttata 229  Q
    ||||||||||| |||||||||||||||||||||    
T  44590066 gttcttcaagatagcttatgaaaacaacttata 44590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 12110392 - 12110325
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    ||||||||||| |||||||||||||| |||||||   || |||  ||||||||||||||||||||||||||    
T  12110392 gttcttcaagatagcttatgaaaacagcttatag---cttataccaaaacaatttgactttattttatctt 12110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 1417284 - 1417227
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||| |   || |||| ||||||||||||||||||||||||||||    
T  1417284 agcttatgaaaacaacttattg---cttatatgaaaacaatttgactttattttatctttt 1417227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 12110305 - 12110248
Alignment:
Q  269 ttcataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagggtctaa 325  Q
    ||||||||||||||  ||||||| ||||||||||| |||||||| |||||||| ||||    
T  12110305 ttcataagtgcttatgctataagttgcaaattaagctgtttatcgaaacagggcctaa 12110248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 12835007 - 12835044
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  12835007 agctaatatgaaaacaatttgactttattttatctttt 12835044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 23918957 - 23918920
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  23918957 agcttatatgaaaacaatttgactttattttatctttt 23918920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 46825093 - 46825060
Alignment:
Q  237 atataaaaacaatttgactttattttatcttttt 270  Q
    |||| |||||||||||||||||||||||||||||    
T  46825093 atatgaaaacaatttgactttattttatcttttt 46825060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 946742 - 946714
Alignment:
Q  242 aaaacaatttgactttattttatcttttt 270  Q
    |||||||||||||||||||||||||||||    
T  946742 aaaacaatttgactttattttatcttttt 946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 9527138 - 9527197
Alignment:
Q  207 agagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||||||||||||    | |||| |||||| |||||||||||| ||||||||    
T  9527138 agagcttatgaaaacaacttatagt---ttatatgaaaacagtttgactttattatatctttt 9527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 17989063 - 17989130
Alignment:
Q  199 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||| |||||||||||||||||| ||||||    | |||| |||||| |||||||||||||||| ||||    
T  17989063 tcttcaggagagcttatgaaaacaaattatagt---ttatatgaaaacagtttgactttattttatatttt 17989130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 25596019 - 25595983
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  25596019 ctataagctgcaagttaagttgtttatccaaacaggg 25595983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 27548289 - 27548226
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||| |||||||||||||| |||||||   || | || ||||||||| ||||||||||||||||||    
T  27548289 caagatagcttatgaaaacagcttatag---cttaaatgaaaacaattagactttattttatctttt 27548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 30456525 - 30456557
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||||||||||||||||||||||||||    
T  30456525 atatgaaaacaatttgactttattttatctttt 30456557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 31338503 - 31338471
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| |||||||||||||||||||||    
T  31338503 atataaaaacagtttgactttattttatctttt 31338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 34672893 - 34672941
Alignment:
Q  272 ataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagg 319  Q
    |||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  34672893 ataagtgcttatgctataagctgaaaattaagctgtttatccaaacagg 34672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 39591542 - 39591574
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||||||||||||||||||||||||||    
T  39591542 atatgaaaacaatttgactttattttatctttt 39591574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 45813236 - 45813287
Alignment:
Q  215 tgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||   | |||| ||||||| ||||||||||||||||||||    
T  45813236 tgaaaacaacttataga---ttatatgaaaacaagttgactttattttatctttt 45813287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 46531528 - 46531496
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| |||||||||||||||||||||    
T  46531528 atataaaaacagtttgactttattttatctttt 46531496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 48397668 - 48397609
Alignment:
Q  207 agagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||| |||||||||||||||||   || | |||||||||||||||||||||||||||||||    
T  48397668 agagctaatgaaaacaacttatag---cttaaataaaaacaatttgactttattttatctttt 48397609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 1816603 - 1816546
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||    || ||| ||||||| |||||||||||||||||||||    
T  1816603 agcttatgaaaacaacttatat---cttatacaaaaacagtttgactttattttatctttt 1816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 30574070 - 30574104
Alignment:
Q  285 tataagctgcaaattaaggtgtttatccaaacagg 319  Q
    |||||||||||||||| ||||||||||||||||||    
T  30574070 tataagctgcaaattatggtgtttatccaaacagg 30574104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 30956664 - 30956733
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||| ||||| ||||| ||||||||||||||||   |  ||| ||||||||||| |||||||||||||||||    
T  30956664 gttctccaagatagcttttgaaaacaacttatag---cctatacaaaaacaatttaactttattttatctttt 30956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 30972476 - 30972545
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||| ||||| ||||| ||||||||||||||||   |  ||| ||||||||||| |||||||||||||||||    
T  30972476 gttctccaagatagcttttgaaaacaacttatag---cctatacaaaaacaatttaactttattttatctttt 30972545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 31337451 - 31337508
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||| ||||||||||    || ||||||||||| |||||||||||||||||||||    
T  31337451 agcttatgaatacaacttataa---cttatataaaaacagtttgactttattttatctttt 31337508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 33405205 - 33405274
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| |||||||||||||| |||||   |||| |||| ||||||| || ||||||||||| |||||    
T  33405205 gttcttcaagatagcttatgaaaacagcttat---agcttatatgaaaacaaattaactttattttacctttt 33405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 43079684 - 43079650
Alignment:
Q  286 ataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    ||||||||||||||||| |||||||||||||||||    
T  43079684 ataagctgcaaattaagctgtttatccaaacaggg 43079650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 3182442 - 3182471
Alignment:
Q  242 aaaacaatttgactttattttatctttttc 271  Q
    ||||||||||||||||||||||||||||||    
T  3182442 aaaacaatttgactttattttatctttttc 3182471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 42808979 - 42808942
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  42808979 agcttatataaaaacaatttaactttattttatctttt 42808942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 19679461 - 19679497
Alignment:
Q  283 actataagctgcaaattaaggtgtttatccaaacagg 319  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  19679461 actataagctgcaaattaagttgtttatccaaccagg 19679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 31762238 - 31762206
Alignment:
Q  285 tataagctgcaaattaaggtgtttatccaaaca 317  Q
    |||||||||||||||||| ||||||||||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaaca 31762206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 34770912 - 34770855
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||||||||||||||   || | || ||||||||||||||||||||||||||||    
T  34770912 agcttatgaaaacaacttatag---cttaaatgaaaacaatttgactttattttatctttt 34770855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 31751712 - 31751749
Alignment:
Q  283 actataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31751712 actataagctgcaaattaagttgtttatccaaacaggg 31751749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 6509353 - 6509408
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    |||||||||||||| |||||||   || ||||||| |||||||||||||||||||||||    
T  6509353 agcttatgaaaacagcttatag---cttatataaatacaatttgactttattttatctt 6509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 32976343 - 32976304
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtct 323  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  32976343 ctataagctgcatattaaggtgtttatccaaacatggtct 32976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 6526369 - 6526414
Alignment:
Q  272 ataagtgcttaactataagctgcaaattaaggtgtttatccaaaca 317  Q
    |||| ||||||  |||||||||||||||||| ||||||||||||||    
T  6526369 ataaatgcttatgtataagctgcaaattaagctgtttatccaaaca 6526414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 39881826 - 39881855
Alignment:
Q  241 aaaaacaatttgactttattttatcttttt 270  Q
    ||||||||||||||||||||||||||||||    
T  39881826 aaaaacaatttgactttattttatcttttt 39881855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 45071202 - 45071165
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  45071202 agcttatataaaaacaatttgactttattttgtctttt 45071165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 1112775 - 1112735
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtcta 324  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  1112775 ctataagctgcaaattaagttgtttttctaaacagggtcta 1112735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 14482193 - 14482165
Alignment:
Q  241 aaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||||||||||    
T  14482193 aaaaacaatttgactttattttatctttt 14482165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 28784870 - 28784902
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||||||||||||||||||||||||||    
T  28784870 atatcaaaacaatttgactttattttatctttt 28784902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 34205267 - 34205206
Alignment:
Q  201 ttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 265  Q
    ||||||| ||||||||||||||||||||   |||| ||||||||| |||||||||||| ||||||    
T  34205267 ttcaagatagcttatgaaaacaacttat---agcttatataaaaataatttgactttactttatc 34205206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 11715018 - 11715055
Alignment:
Q  286 ataagctgcaaattaaggtgtttatccaaacagggtct 323  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtct 11715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 18857444 - 18857503
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 265  Q
    ||||| |||||||||||||| ||||||||   | ||| |||||||||||||||||||||||||    
T  18857444 caagacagcttatgaaaacagcttataga---ttatagaaaaacaatttgactttattttatc 18857503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 42573936 - 42573971
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagg 319  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42573936 ctataagctgcaaattaagctgtttatccaaacagg 42573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 6593213 - 6593175
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtc 322  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  6593213 ctataagctgtaaattaagttgtttatccaaacagggtc 6593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 9202786 - 9202855
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| | |||||||||||| ||||| |   || |||| |||||||||| |||||||||||||||||    
T  9202786 gttcttcaagataacttatgaaaacagcttattg---cttatatgaaaacaatttaactttattttatctttt 9202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 10272482 - 10272538
Alignment:
Q  210 gcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||   || |||  ||||||||||||||| ||||||||||||    
T  10272482 gcttatgaaaacaacttatag---cttatacgaaaacaatttgacttaattttatctttt 10272538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 32969187 - 32969224
Alignment:
Q  232 agctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  32969187 agcttatataaaaataatttgactttattttatctttt 32969224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  285 tataagctgcaaattaaggtgtttatccaaaca 317  Q
    |||||||||||||||||| ||||||||||||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 29845054 - 29845090
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  29845054 ctataagttgcaaattaagttgtttatccaaacaggg 29845090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 38105020 - 38105056
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    |||||||||||||| |||| |||||||||||||||||    
T  38105020 ctataagctgcaaaataagttgtttatccaaacaggg 38105056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 40534219 - 40534159
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||||||||||||||  |||| |||| |||| ||| ||| ||||||| |||||||    
T  40534219 agcttatgaaaacaacttatactagcttatatgaaaataatgtgattttatttcatctttt 40534159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 2996599 - 2996538
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    ||||| |||||||||||||||||||||    || ||||||||||||||||||| |||||||||||    
T  2996599 caagatagcttatgaaaacaacttataa---cttatataaaaacaatttgactgtattttatctt 2996538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 51630142 - 51630074
Alignment:
Q  198 ttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||||||||| |||||||||||| | |||||||   || |||| |||||||||| |||||||||||||||||    
T  51630142 ttcttcaagatagcttatgaaaatagcttatag---cttatatcaaaacaatttaactttattttatctttt 51630074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 7368105 - 7368157
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttatttta 263  Q
    |||||||| ||||||||||||  |||| |||| ||||||||||||||||||||||    
T  7368105 agcttatggaaacaacttata--agcttatatgaaaacaatttgactttatttta 7368157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 19039693 - 19039658
Alignment:
Q  285 tataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    |||||||||||||||||| |||||||||||||||||    
T  19039693 tataagctgcaaattaagttgtttatccaaacaggg 19039658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 20936357 - 20936404
Alignment:
Q  271 cataagtgctta-actataagctgcaaattaaggtgtttatccaaaca 317  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||    
T  20936357 cataagtgcttatactataagctgcaaattaagctctttatccaaaca 20936404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 46201307 - 46201276
Alignment:
Q  289 agctgcaaattaaggtgtttatccaaacaggg 320  Q
    ||||||||||||||||||||||||||||||||    
T  46201307 agctgcaaattaaggtgtttatccaaacaggg 46201276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 54214928 - 54214889
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacagggtct 323  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  54214928 ctataagctgcaaattaagttgtttatccaaacagagtct 54214889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 47119003 - 47119072
Alignment:
Q  197 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| ||| |||||| |||||||||   |||| |||| |||||||||| ||||| |||||||||||    
T  47119003 gttcttcaagatagcatatgaatacaacttat---agcttatatgaaaacaatttaactttgttttatctttt 47119072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 30024726 - 30024663
Alignment:
Q  209 agcttatgaaaacaacttataga---agctcatataaaaacaatttgactttattttatctttt 269  Q
    ||||||||| ||||||||||||    |||| |||| |||||||||| |||||||||||||||||    
T  30024726 agcttatgacaacaacttatagttatagcttatatgaaaacaattttactttattttatctttt 30024663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 13949894 - 13949949
Alignment:
Q  209 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    |||||||  |||||||||||||   || |||| ||||||||||||||||||||||||||    
T  13949894 agcttatacaaacaacttatag---cttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 19429563 - 19429599
Alignment:
Q  237 atataaaaacaatttgactttattttatctttttcat 273  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  19429563 atataaaaacagtttgactttattttatctttgtcat 19429599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 46013375 - 46013407
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| |||||||||||||||||||||    
T  46013375 atataaaaacagtttgactttattttatctttt 46013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 46247213 - 46247181
Alignment:
Q  237 atataaaaacaatttgactttattttatctttt 269  Q
    ||||||||||| |||||||||||||||||||||    
T  46247213 atataaaaacagtttgactttattttatctttt 46247181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 47399447 - 47399411
Alignment:
Q  284 ctataagctgcaaattaaggtgtttatccaaacaggg 320  Q
    |||||||||||||| |||| |||||||||||||||||    
T  47399447 ctataagctgcaaactaagttgtttatccaaacaggg 47399411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 49219169 - 49219102
Alignment:
Q  199 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 269  Q
    |||| |||| || |||||||||||||||||||   || |||| |||| |||||||||||||||||| ||||    
T  49219169 tctttaagatagtttatgaaaacaacttatag---cttatatgaaaataatttgactttattttatatttt 49219102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 52734839 - 52734803
Alignment:
Q  193 atatgttcttcaagagagcttatgaaaacaacttata 229  Q
    |||||||||||| || |||||||||||||||||||||    
T  52734839 atatgttcttcatgatagcttatgaaaacaacttata 52734803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 27602 - 27541
Alignment:
Q  203 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 267  Q
    ||||| || |||||||||||||||||||    | |||| ||||||||||||||||||||||||||    
T  27602 caagatagtttatgaaaacaacttatagt---ttatatgaaaacaatttgactttattttatctt 27541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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