View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_14 (Length: 304)
Name: NF9297_low_14
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 46940381 - 46940110
Alignment:
| Q |
13 |
gagatacactcgatcaagatttgtcttccctaatcaatgttgactaaagttcaaccaacctgaaccatgtccccattattgatgaaaccaataacataga |
112 |
Q |
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| T |
46940381 |
gagatacactcgatcaagatttgtcttcccgaatcaatgttgactaaagttcaaccaacctgaaccatgtccccattattgatgaaaccaataacataga |
46940282 |
T |
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| Q |
113 |
gatcatgattcatgaatccatgacatggtaaaacacacaggggccgaatttgattctaagactgcatcttgattattgactattcataaaatgtagctag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
46940281 |
gatcatgattcatgaatccatgacatggtaaaacacacaggggccgaatttgattctaagactgcatcttgattatcgactaatcataaaatgtagctag |
46940182 |
T |
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| Q |
213 |
gacgatagttggacttggtttggtcaaccacagtaagtgttcaaatgaatagcagttgactttgtaatgacc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46940181 |
gacgatagttggacttggtttggtcaaccacagtaagtgttcaaatgaatagcagttgactttgtaatgacc |
46940110 |
T |
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