View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_15 (Length: 282)
Name: NF9297_low_15
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 38478569 - 38478300
Alignment:
| Q |
13 |
taggaatcaaaactcaattattataacgccaatttctcatgaatcataccaactaaagcgaaaaacagtttaacttacatttagtgataatgccctcaac |
112 |
Q |
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| T |
38478569 |
taggaattaaaactcaattattataacgccaatttctcatgaatcatactaactaaagcgaaaaacagtttaacttacatttagtgataatgccctcaac |
38478470 |
T |
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| Q |
113 |
acaaaccatagaacctataaattcagaaagaagatccctaggcgtaactcggcgagaaacaaaaggaccttcaaatccaacaagcacttgttccccttcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38478469 |
acaaaccatagaacctataaattcagaaagaagatccctaggcgtaactcggcgagaaacaaaaggaccttcaaatccaacaagcacttgttccccttcc |
38478370 |
T |
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| Q |
213 |
ttcaaatactttggatcactaccacgaacagtttcggtcaccgcatcacagaatgattgtatatactcac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38478369 |
ttcaaatactttggatcactaccacgaacagtttcggtcaccgcatcacagaatgattgcatatactcac |
38478300 |
T |
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