View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_16 (Length: 261)
Name: NF9297_low_16
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 46940381 - 46940632
Alignment:
| Q |
1 |
cagattctcagtcgatctatgaccctgagcttgcataagatcagatgtaggatcatagtatcttgtatattccagtatgcnnnnnnnnnnatattattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
46940381 |
cagattctcagtcgatctatgaccctgagcttgcataagatcagatgtaggatcatagtatcttgtatattccagtatgctttttttat-attttattgt |
46940479 |
T |
|
| Q |
101 |
ttggttgagaatgtggggtggtccagccatgataccacgccatcaaaggcattggattctagtttggctgcaatcttggagggttctttgtaagtagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46940480 |
ttggttgagaatgtggggtggtccagccatgataccacgccatcaaaggcattggattctagtttggctgcaatcttggagggttctttgtaagtagcta |
46940579 |
T |
|
| Q |
201 |
tgttgatctaagtgaacaaatgtgttgtaggattatctcagagaataatctac |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46940580 |
tgttgatctaagtgaacaaatgtgttgtaggattatctcagagaatgatctac |
46940632 |
T |
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