View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_18 (Length: 251)
Name: NF9297_low_18
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 54620050 - 54619810
Alignment:
| Q |
12 |
cagagacaaaatatgattctaataaattggagacaaagaaatgtctgcccataacactcctttacaccgcatacttagagctatgtattcatcattctgt |
111 |
Q |
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| T |
54620050 |
cagagacaaaatatgattctaataaattggagacaaagaaatgtctgcccataacactcctttacaccgcatacttagagctatgtattcatcattctgt |
54619951 |
T |
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| Q |
112 |
ggcttagctatcactgtctcaatcaacaccctcttattctgtccccaattggctactttatgatggtccactatccctgctctct-nnnnnnnnntaaca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54619950 |
ggcttagctatcactgtctcaatcaacaccctcttattctgtccccaattggctactttatgatggtccactatccctgctctctcccccccccctaaca |
54619851 |
T |
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| Q |
211 |
tgttcagtgttttctttctgctttatcccaactaaatggat |
251 |
Q |
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| T |
54619850 |
tgttcagtgttttctttctgctttatcccaactaaatggat |
54619810 |
T |
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