View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_19 (Length: 249)
Name: NF9297_low_19
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 19268532 - 19268780
Alignment:
| Q |
1 |
gatgtaaaacagaatataaaaactagaaagaaagaggaacatatcaagaagctaccgtttaatttaaagcctataatcattcctaccgttgctcgcacaa |
100 |
Q |
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| T |
19268532 |
gatgtaaaacagaatataaaaactagaaagaaagaggaacagatcaagaagctaccgtttaatttaaagactataatcattcctaccgttactcgcacaa |
19268631 |
T |
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| Q |
101 |
atatgatattttagggtttaagagatttagaagaaagaacaaattagggaggaaaaaatagtggcagaacaaatcgagcaagaaacgacatcagcatgga |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||| |
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| T |
19268632 |
atatgatatttcagggtttaagagatttagaagaaagaacaaattagggatgaaaaaacagtggcagaacaaatcgatcaagaaacgacatcagtatgga |
19268731 |
T |
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| Q |
201 |
tcgcttgcaagacgttgaagctgacagcaaaggaaggctacatggatgt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19268732 |
tcgcttgcaagacgttgaagctgacagcaaaggaaggccacatggatgt |
19268780 |
T |
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