View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_21 (Length: 230)
Name: NF9297_low_21
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 48806309 - 48806522
Alignment:
| Q |
1 |
ggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaagttgttatcagagaggtctagtgtgatgagttgg |
100 |
Q |
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| T |
48806309 |
ggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaagttgttatcagagaggtctagtgtgatgagttgg |
48806408 |
T |
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| Q |
101 |
gtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatttggttgatgtgtgtggaatctgtggtgcaggtgaatccac |
200 |
Q |
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| T |
48806409 |
gtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatttggttgatgtgtgtggaatctgtggtgcaggtgaaaccac |
48806508 |
T |
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| Q |
201 |
ataagaagtaagtg |
214 |
Q |
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| T |
48806509 |
ataagaagtaagtg |
48806522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13567650 - 13567584
Alignment:
| Q |
1 |
ggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag |
67 |
Q |
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| T |
13567650 |
ggatcagagggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaag |
13567584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 44339218 - 44339175
Alignment:
| Q |
11 |
gttaaggttttgaggttggaaagggaagagattgaagaaggaat |
54 |
Q |
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| T |
44339218 |
gttaagattttgaggttggaaagggaagatattgaagaaggaat |
44339175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31860086 - 31860152
Alignment:
| Q |
1 |
ggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag |
67 |
Q |
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| T |
31860086 |
ggatcagagggttaagattttgaggttggaaaggctagatattgaagaaggaatagagtcagagaag |
31860152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 34057160 - 34057007
Alignment:
| Q |
61 |
aaagaagttgttatcagagaggtctagtgtgatgagttgggtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatt |
160 |
Q |
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|||||||||||| | || |||| |||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
34057160 |
aaagaagttgttgccggataggtatagtgtgacaagtttggtgagttgagagatgagtgaggtgagtgagcctgagtagcttgcagggttgagggtgatt |
34057061 |
T |
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| Q |
161 |
tggttgatgtgtgtggaatctgtggtgcaggtgaatccacataagaagtaagtg |
214 |
Q |
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| T |
34057060 |
tgattgatgtgtgtggaatcaaaggtgtaggtgaacccacagatgaagtgagtg |
34057007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 5061885 - 5061940
Alignment:
| Q |
11 |
gttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaa |
66 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
5061885 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa |
5061940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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