View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_23 (Length: 211)
Name: NF9297_low_23
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 48674217 - 48674397
Alignment:
| Q |
18 |
aaacatactcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaactgctatacatccagaagcattcttaccnnnnnnn |
117 |
Q |
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| T |
48674217 |
aaacatactcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaactgctatacatccagaagcatgcttaccaaaaaaa |
48674316 |
T |
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| Q |
118 |
taacaaaatccagaagcatcattcacaaatgacatacggagcacagatggcataaagagcattacaagaaaaacaccacca |
198 |
Q |
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| T |
48674317 |
taacaaaatccagaagcatcattcacaaatgacatacggagcacagatggcataaagagcattataagaaaaacaccacca |
48674397 |
T |
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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 36199952 - 36199872
Alignment:
| Q |
23 |
tactcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaactgctatacatccagaagcat |
103 |
Q |
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| T |
36199952 |
tactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaactactatatatccagaagcat |
36199872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 21371760 - 21371679
Alignment:
| Q |
23 |
tactcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaactgctatacatccagaagcatt |
104 |
Q |
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| T |
21371760 |
tactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcatt |
21371679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 21385797 - 21385878
Alignment:
| Q |
23 |
tactcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcatgaacctaactgctatacatccagaagcatt |
104 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||| |||||| |
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| T |
21385797 |
tactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcatt |
21385878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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