View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_3 (Length: 469)
Name: NF9297_low_3
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 41 - 289
Target Start/End: Complemental strand, 36362726 - 36362473
Alignment:
| Q |
41 |
tggtgtgtgcg--cgcacacaccatgcatttgtaatttacatttaaagg--ttccatggtgtacctattttttggattttaggtttgaagaaaagcagat |
136 |
Q |
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| T |
36362726 |
tggtgtgtgcgcacacacacaccatgcatatgtaatttacatttaaaggaattccatggtgtacctattttttggattttaggtttgaagaaaagcagat |
36362627 |
T |
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| Q |
137 |
ctaggaaagatcgatccataaactctcgtaaacaaatatatgctagttcttattttcctttgttataccaaataacaaaatgagaaaaatagtagctagg |
236 |
Q |
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| T |
36362626 |
ctaggaaagatcgatccataaactctcgtaaacaaatatatgctagttcttattttcctttgttataccaaataacaaaatgagaaaaatagtagctagg |
36362527 |
T |
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| Q |
237 |
ttgaatacatgataaacccattaattattggt-agtatgtatagggattcatga |
289 |
Q |
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| T |
36362526 |
ttgaatacatgatagatccattaattattggtaagtatgtatagggattcatga |
36362473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 36362426 - 36362301
Alignment:
| Q |
336 |
ctaggtatggatccttaatctttgtgaccttgatttacgtacatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaat |
435 |
Q |
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| T |
36362426 |
ctaggtatggatccttaatctttgtgaccttgatttacgtacatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaat |
36362327 |
T |
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| Q |
436 |
gcatcaaacgtagtataatctaccca |
461 |
Q |
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| T |
36362326 |
gcatcaaacgtagtataatcaaccca |
36362301 |
T |
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