View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9297_low_5 (Length: 423)

Name: NF9297_low_5
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9297_low_5
NF9297_low_5
[»] chr2 (16 HSPs)
chr2 (2-408)||(4188501-4188926)
chr2 (7-133)||(11791549-11791676)
chr2 (151-256)||(11791732-11791837)
chr2 (167-256)||(25895065-25895154)
chr2 (167-256)||(31630225-31630313)
chr2 (169-288)||(3876889-3877013)
chr2 (168-234)||(14166339-14166405)
chr2 (167-256)||(5009262-5009351)
chr2 (7-103)||(14166155-14166252)
chr2 (150-237)||(14166018-14166104)
chr2 (57-132)||(6694243-6694312)
chr2 (178-255)||(12612486-12612562)
chr2 (188-256)||(4188983-4189051)
chr2 (188-256)||(8035440-8035508)
chr2 (206-250)||(12001792-12001836)
chr2 (188-244)||(30265490-30265546)
[»] chr1 (10 HSPs)
chr1 (7-132)||(41007224-41007350)
chr1 (150-256)||(38698948-38699054)
chr1 (150-251)||(41007405-41007506)
chr1 (167-256)||(52913300-52913389)
chr1 (168-256)||(2633306-2633394)
chr1 (167-255)||(1173170-1173258)
chr1 (188-236)||(26879571-26879619)
chr1 (169-234)||(38699114-38699179)
chr1 (263-291)||(2633614-2633642)
chr1 (196-256)||(34173357-34173416)
[»] chr5 (21 HSPs)
chr5 (148-291)||(7209847-7209995)
chr5 (10-256)||(7210051-7210303)
chr5 (56-131)||(36760626-36760700)
chr5 (167-292)||(1996200-1996330)
chr5 (167-256)||(35812065-35812154)
chr5 (167-256)||(35813387-35813476)
chr5 (150-255)||(36759703-36759805)
chr5 (186-255)||(10827273-10827342)
chr5 (188-256)||(16327197-16327265)
chr5 (206-256)||(28559334-28559384)
chr5 (150-256)||(36760730-36760836)
chr5 (188-256)||(4943069-4943138)
chr5 (174-255)||(5746263-5746344)
chr5 (199-255)||(28559417-28559473)
chr5 (188-256)||(37642893-37642961)
chr5 (197-244)||(17400724-17400771)
chr5 (188-257)||(14604164-14604233)
chr5 (7-36)||(36759859-36759888)
chr5 (207-256)||(38680724-38680773)
chr5 (188-232)||(12713055-12713099)
chr5 (188-232)||(12774319-12774363)
[»] chr8 (10 HSPs)
chr8 (150-255)||(24793061-24793166)
chr8 (164-252)||(14550101-14550189)
chr8 (167-256)||(15563991-15564079)
chr8 (163-256)||(36052992-36053085)
chr8 (150-238)||(22813443-22813531)
chr8 (177-256)||(9399985-9400065)
chr8 (189-255)||(14895003-14895069)
chr8 (188-256)||(41151504-41151572)
chr8 (168-214)||(24827518-24827564)
chr8 (206-256)||(27127973-27128023)
[»] chr4 (16 HSPs)
chr4 (163-256)||(45787179-45787272)
chr4 (151-312)||(17231968-17232132)
chr4 (150-232)||(40119579-40119661)
chr4 (163-256)||(12592278-12592371)
chr4 (7-75)||(40119716-40119785)
chr4 (163-256)||(40147050-40147143)
chr4 (164-256)||(51950569-51950661)
chr4 (198-256)||(45038356-45038414)
chr4 (204-256)||(24684147-24684199)
chr4 (163-210)||(50290278-50290325)
chr4 (194-244)||(40395275-40395325)
chr4 (176-238)||(41519258-41519320)
chr4 (167-256)||(2787984-2788072)
chr4 (194-255)||(12498796-12498857)
chr4 (91-132)||(40120705-40120746)
chr4 (200-256)||(51950663-51950719)
[»] chr7 (17 HSPs)
chr7 (168-255)||(43258405-43258492)
chr7 (167-256)||(27280713-27280802)
chr7 (188-256)||(29019347-29019415)
chr7 (150-216)||(23164031-23164097)
chr7 (7-131)||(22026521-22026646)
chr7 (148-287)||(26978287-26978425)
chr7 (170-288)||(3198273-3198396)
chr7 (163-256)||(40951786-40951882)
chr7 (167-235)||(4048322-4048390)
chr7 (197-256)||(4048392-4048451)
chr7 (205-256)||(6694717-6694768)
chr7 (175-238)||(30869557-30869620)
chr7 (206-256)||(11975546-11975596)
chr7 (207-256)||(27576520-27576569)
chr7 (206-255)||(42312859-42312908)
chr7 (188-256)||(6694630-6694697)
chr7 (228-256)||(30869448-30869476)
[»] chr3 (16 HSPs)
chr3 (164-256)||(47891266-47891358)
chr3 (175-290)||(26976376-26976496)
chr3 (163-243)||(40286394-40286474)
chr3 (206-292)||(13902992-13903083)
chr3 (177-256)||(25848457-25848536)
chr3 (7-132)||(3378942-3379068)
chr3 (175-235)||(36900031-36900091)
chr3 (165-256)||(28813936-28814027)
chr3 (167-256)||(43650144-43650234)
chr3 (167-256)||(32186622-32186711)
chr3 (163-256)||(5442554-5442648)
chr3 (206-256)||(14964928-14964978)
chr3 (198-256)||(26724109-26724167)
chr3 (188-238)||(47069699-47069749)
chr3 (188-253)||(36374905-36374970)
chr3 (188-256)||(18019992-18020060)
[»] chr6 (9 HSPs)
chr6 (7-132)||(5197537-5197663)
chr6 (167-255)||(24059765-24059853)
chr6 (171-314)||(3848526-3848672)
chr6 (188-256)||(21598616-21598684)
chr6 (198-256)||(17342621-17342679)
chr6 (167-252)||(364088-364173)
chr6 (188-256)||(17136943-17137011)
chr6 (206-256)||(2761500-2761550)
chr6 (190-256)||(2761574-2761640)
[»] scaffold0018 (1 HSPs)
scaffold0018 (188-256)||(161575-161643)
[»] scaffold0128 (1 HSPs)
scaffold0128 (170-255)||(2481-2566)
[»] scaffold0279 (1 HSPs)
scaffold0279 (207-256)||(1124-1173)
[»] scaffold0157 (1 HSPs)
scaffold0157 (194-255)||(21620-21681)
[»] scaffold1191 (1 HSPs)
scaffold1191 (176-232)||(1351-1407)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 4188926 - 4188501
Alignment:
Q  2 taaataagagttcaaggaagttgttatcaattattctgtgtatatgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgca 101  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||    
T  4188926 taaataagagttcaaggaagttgttatcaattattctttgtatatgacttcgatttgaggttcataaagaatgaaaatgagagggtcaaagttgattgca 4188827  T
Q  102 aggatgtatgtccttggattgttttatgttc-----------atgagaatacatgatatatcatacacttaactgtcacatcattgtttttgtaatattt 190  Q
    ||||||||||||||||||||||||||| |||           ||||| |||||||||| ||| ||||||||| |||||| |||||||||||||||| |||    
T  4188826 aggatgtatgtccttggattgttttatattctaagatacctgatgaggatacatgatacatcgtacacttaagtgtcacgtcattgtttttgtaatgttt 4188727  T
Q  191 ggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagttatttattacaaacctcaaactta 285  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||      ||||||||| |||||||| ||||| |||    
T  4188726 ggttaatagaatgaataaattgaaaacgtttagaaacttaaaggacttgtgtgtgaccaaaataacttaatggagttatttgttacaaacttcaaagtta 4188627  T
Q  286 aaggattc-ttatgatgtaatttagcctaaat-aaaacttcatatgaactataatgtggagccccaaattaaagaagatacttgg-acctataaatcatt 382  Q
    |||||||| |  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4188626 aaggattcatggtgatgtaatttagcctaaataaaaacttcatatgaactatactgtggagccccaaattaaagaagatacgtggaacctataaatcatt 4188527  T
Q  383 tattttacaaactttgatgcaaattt 408  Q
    ||||||||||||||||||||||||||    
T  4188526 tattttacaaactttgatgcaaattt 4188501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 11791676 - 11791549
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtata-tgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaagga 105  Q
    ||||||||||||||| | |||||||| ||| |||||||| |  |||||| | |||||||||||| ||||| |||||||| |||| |||||||||||||||    
T  11791676 aagagttcaaggaagctattatcaatcattatgtgtataatagcttcgattcgaggttcataaagaatgacaatgagagagtcagagttggttgcaagga 11791577  T
Q  106 tgtatgtccttggattgttttatgttca 133  Q
     | ||| |||||||||||||||||||||    
T  11791576 cggatgcccttggattgttttatgttca 11791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 11791732 - 11791837
Alignment:
Q  151 tcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaa 250  Q
    ||||||||||||||| || ||||| ||||||||||  ||||||||| | ||||| ||||||||||||||||| ||| ||| ||||||| ||||| |||||    
T  11791732 tcatacacttaactgccagatcatcgtttttgtaacgtttggttaacaaaatgactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaa 11791831  T
Q  251 aataac 256  Q
    ||||||    
T  11791832 aataac 11791837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 25895065 - 25895154
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| ||||||||||| ||||||||| | || || ||||||||||||||||| ||| | ||||||||| ||||| || ||||||||    
T  25895065 cacatcatcgtttttgtaatgtttggttaacaaaaggactaaattgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataac 25895154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 31630225 - 31630313
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| |||||||||| |||||||||| | ||||| |||||||||||| |||| ||| ||||| ||||| ||||| |||||||||||    
T  31630225 cacatcatcgtttttgtaacatttggttaacaaaatgactaaattgaaaacatttacaaacttaaa-gacttatgtgtgaccaaaataac 31630313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 3876889 - 3877013
Alignment:
Q  169 catcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagtta 263  Q
    |||||| ||||||||||| |||||||||||||| || ||||||| ||| ||||| | |  |||||||||| ||||| |||||||||||     |||   |    
T  3876889 catcatcgtttttgtaatgtttggttaatagaaggactaaattggaaaggtttacatacgtaaaggacttatgtgtgaccaaaataacttaaaagatcaa 3876988  T
Q  264 tttattacaaacctcaaacttaaag 288  Q
    |||||||||||||||||| ||||||    
T  3876989 tttattacaaacctcaaatttaaag 3877013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 14166339 - 14166405
Alignment:
Q  168 acatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaagg 234  Q
    |||| ||||||||||||| ||||| ||||||||| || ||||||||||||||||| ||| |||||||    
T  14166339 acataattgtttttgtaacatttgcttaatagaaggactaaattgaaaacgtttaaaaacttaaagg 14166405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 5009351 - 5009262
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| ||||||||||| ||||||||| |||| || |||||||||||| |||| |||  |||| ||||| ||||| | |||||||||    
T  5009351 cacatcatcgtttttgtaatgtttggttaagagaaggactaaattgaaaacatttacaaacataaaagacttatgtgtgatcaaaataac 5009262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 14166155 - 14166252
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtata-tgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaag 103  Q
    ||||||| ||||||| | |||||||||||| |||||||| || |||| | ||||| |||||||| ||||||||| ||||| ||| |||||||| ||||    
T  14166155 aagagtttaaggaagcttttatcaattattttgtgtatagtgacttcaatttgagtttcataaagaatgaaaattagaggttcagagttggttccaag 14166252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 14166104 - 14166018
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggact 237  Q
    |||||| |||||||||   |||||||||||| ||||  ||||||||||| ||||| |||||||||||| |||| ||| ||||||||||    
T  14166104 atcataaacttaactgctgcatcattgtttt-gtaacgtttggttaataaaatgactaaattgaaaacatttacaaacttaaaggact 14166018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 6694312 - 6694243
Alignment:
Q  57 tgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaaggatgtatgtccttggattgttttatgttc 132  Q
    ||||||||||||| ||||| ||||||||      |||| |||||||||||| ||| ||||||||||||||||||||    
T  6694312 tgaggttcataaagaatgacaatgagag------agtttgttgcaaggatgaatgcccttggattgttttatgttc 6694243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 12612562 - 12612486
Alignment:
Q  178 ttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    ||||||||| ||||||||| |||| || |||||||||||| |||| ||| ||||| ||||| ||||| | ||||||||    
T  12612562 ttttgtaatgtttggttaacagaa-gagtaaattgaaaacatttacaaacttaaatgacttatgtgtgatcaaaataa 12612486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 4188983 - 4189051
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | ||||| ||||||||||||||||| ||| |||| |||||| | ||| | |||||||||    
T  4188983 tttggttaacaaaatgactaaattgaaaacgtttataaacttaatggacttatatgtgatcaaaataac 4189051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 8035440 - 8035508
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | ||||| |||||| |||||||||| ||| |||||  |||| ||| |||||||||||||    
T  8035440 tttggttaacataatgactaaattaaaaacgtttacaaacttaaaaaacttatgtataaccaaaataac 8035508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 12001792 - 12001836
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaa 250  Q
    ||||| ||||||||||| ||||||||| ||||||||||| |||||    
T  12001792 taaatcgaaaacgtttacaaatttaaaagacttgtgtgtgaccaa 12001836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 30265546 - 30265490
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgt 244  Q
    |||| |||| ||||||| ||||||||||||||||| ||| |||||| |||| |||||    
T  30265546 tttgtttaacagaatgactaaattgaaaacgtttacaaacttaaagcacttatgtgt 30265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 41007350 - 41007224
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtata-tgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaagga 105  Q
    |||||||||| |||| |||||||||||||| |||||||| |  ||| || |||||||||||||| ||||| ||||| || |||| |||||||||||||||    
T  41007350 aagagttcaatgaagctgttatcaattattatgtgtataatagctttgatttgaggttcataaagaatgacaatgaaagagtcatagttggttgcaagga 41007251  T
Q  106 tgtatgtccttggattgttttatgttc 132  Q
    || ||| ||||||||||||||||||||    
T  41007250 tggatgcccttggattgttttatgttc 41007224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 38699054 - 38698948
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaacca 249  Q
    |||||||||||||||   ||||||| ||||||||||||||||||||| |  |||| ||||||||||||||||| ||||||||| |||| |||||| ||||    
T  38699054 atcatacacttaacttctacatcatcgtttttgtaatatttggttaacaacatgactaaattgaaaacgtttacaaatttaaaagactcgtgtgtgacca 38698955  T
Q  250 aaataac 256  Q
    |||||||    
T  38698954 aaataac 38698948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 41007405 - 41007506
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaacca 249  Q
    ||||||||||||||| ||| |||||  |||||||||| |||| |||| ||||||| ||||||||||||||||| ||| ||||| ||||| | ||| ||||    
T  41007405 atcatacacttaactatcagatcatcatttttgtaatgtttgattaacagaatgactaaattgaaaacgtttacaaacttaaaagacttatatgtgacca 41007504  T
Q  250 aa 251  Q
    ||    
T  41007505 aa 41007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 52913300 - 52913389
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| ||||||||||| ||||||||| |||| || ||||| ||||||||||| ||| ||||||||||| ||||| | |||||||||    
T  52913300 cacatcatcgtttttgtaatgtttggttaacagaaggactaaatagaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataac 52913389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 2633306 - 2633394
Alignment:
Q  168 acatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| ||||||||||| ||||||||| | ||||| |||||| |||| ||||| ||||||||||||||| || || || ||||||||    
T  2633306 acatcatcgtttttgtaatgtttggttaacataatgactaaattaaaaatgtttacaaatttaaaggacttatgcgtgacaaaaataac 2633394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 1173170 - 1173258
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||| ||||||||||| |||| |||| |||| || ||||||||||||||| | ||| | ||||||||| ||||| || |||||||    
T  1173170 cacatcatcgtttttgtaatgtttgtttaacagaaagactaaattgaaaacgttcacaaactcaaaggacttatgtgtgacaaaaataa 1173258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 26879571 - 26879619
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggac 236  Q
    ||||||||| | ||||| ||||||||||||||||| |||||||||||||    
T  26879571 tttggttaacataatgactaaattgaaaacgtttaaaaatttaaaggac 26879619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 38699114 - 38699179
Alignment:
Q  169 catcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaagg 234  Q
    |||||| ||||||||||  |||||||||  ||| || ||||||||||||||||| ||| |||||||    
T  38699114 catcatcgtttttgtaacgtttggttaaccgaaggattaaattgaaaacgtttacaaacttaaagg 38699179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 2633614 - 2633642
Alignment:
Q  263 atttattacaaacctcaaacttaaaggat 291  Q
    |||||||||||||||||||||||||||||    
T  2633614 atttattacaaacctcaaacttaaaggat 2633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 34173416 - 34173357
Alignment:
Q  196 atagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||| || ||||| ||||||||| | ||||||||||||||| | |||||||||||||||    
T  34173416 atagaaggactaaatcgaaaacgtt-acaaatttaaaggacttatttgtaaccaaaataac 34173357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 7209995 - 7209847
Alignment:
Q  148 atatcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaac 247  Q
    ||||| ||||||||| ||||||||||| ||||||||||| ||||||||| | ||  | ||||||||||||||||| ||| ||||||||||| ||||| ||    
T  7209995 atatcttacacttaattgtcacatcatcgtttttgtaatgtttggttaacataagaactaaattgaaaacgtttacaaacttaaaggacttatgtgtgac 7209896  T
Q  248 caaaataac-----agagttatttattacaaacctcaaacttaaaggat 291  Q
    |||||||||      ||  ||||||||||||||||||||| ||||||||    
T  7209895 caaaataacttaaatgacgtatttattacaaacctcaaacataaaggat 7209847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 7210051 - 7210303
Alignment:
Q  10 agttcaaggaagttgttatcaattattctgtgtatat-gccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaaggatgt 108  Q
    |||||||||||| |||||||||||||| ||||||||  | |||||| ||||| |||||||| ||||||||||||| |  ||    || |||||||||||     
T  7210051 agttcaaggaagctgttatcaattattttgtgtataacgacttcgatttgagattcataaagaatgaaaatgagaag--ca----tgattgcaaggatga 7210144  T
Q  109 atgtccttggattgttttatgttc-----------atgagaatacatgatatatcatacacttaactgtcacatcattgtttttgtaatatttggttaat 197  Q
    || |||||| ||||||||||||||           ||||| |||||||  | |||| |||  |||||||||||||||| |||||||||  |||  ||||     
T  7210145 atttccttgcattgttttatgttctaagatgtctgatgaggatacatgtcacatcacacatctaactgtcacatcattatttttgtaacgtttaattaac 7210244  T
Q  198 agaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| |||||| |||||||||| ||| ||||| ||||| |||| ||||||||||||    
T  7210245 agaatgactaaatttaaaacgtttacaaacttaaatgacttatgtgcaaccaaaataac 7210303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 36760626 - 36760700
Alignment:
Q  56 ttgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaaggatgtatgtccttggattgttttatgtt 131  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  36760626 ttgaggttcataaaaaatgataatgagagggtcaaagttggttgtaaggatg-atgtcctttgattgttttatgtt 36760700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 1996330 - 1996200
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagt 261  Q
    |||||||||||||||||||| ||||||||  | || || ||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||      || |    
T  1996330 cacatcattgtttttgtaatgtttggttatcaaaaagactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaaggact 1996231  T
Q  262 tatttattacaaacctcaaacttaaaggatt 292  Q
     || ||||||||||| |||||||||||||||    
T  1996230 aatctattacaaaccccaaacttaaaggatt 1996200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 35812065 - 35812154
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||||||||||  ||||||||||||||||| |||| | ||||  |||| ||||||||| || || ||||| |||||||||||    
T  35812065 cacatcattgtttttgtaaagtttggttaatagaatgactaaaataaaaatatttataaatttaaatgatttatgtgtgaccaaaataac 35812154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 35813476 - 35813387
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| |||||||||  |||||||||||| || || || |||||||||||||| ||| ||||||||||| ||||| || ||||||||    
T  35813476 cacatcatcgtttttgtagaatttggttaataaaaagactatattgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataac 35813387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 36759805 - 36759703
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaacca 249  Q
    |||| ||||||||||| |||||||||   |||||||| ||||||||| | ||||| |||||||||||| |||| ||| ||||||||||| |  || ||||    
T  36759805 atcacacacttaactgccacatcatt---tttgtaatgtttggttaacataatgactaaattgaaaacatttacaaacttaaaggacttataagtgacca 36759709  T
Q  250 aaataa 255  Q
    ||||||    
T  36759708 aaataa 36759703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 10827273 - 10827342
Alignment:
Q  186 tatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||||||| ||| || ||||| ||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  10827273 tatttggttaatggaaggactaaatcgaaaacgtttacaaacttaaaggacttgtttgtgaccaaaataa 10827342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 16327265 - 16327197
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | || || ||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  16327265 tttggttaacataaggactaaattgaaaacgtttacaaacttaaaggacttatgtgttaccaaaataac 16327197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 28559384 - 28559334
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  28559384 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataac 28559334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 36760730 - 36760836
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaacca 249  Q
    |||||||||||||||| || || ||  |||||  ||| |||||||||||||| || ||||||||||| ||||| ||| | ||| ||||| ||||| |||     
T  36760730 atcatacacttaactgccatattataattttttaaatgtttggttaatagaaggactaaattgaaaatgtttacaaactaaaaagacttatgtgtgaccg 36760829  T
Q  250 aaataac 256  Q
    |||||||    
T  36760830 aaataac 36760836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 4943069 - 4943138
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaa-tttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||| ||||||||||| ||||| ||| || |||| |||| ||||| |||||||||||    
T  4943069 tttggttaatagaatgactaaattgaaaatgtttacaaacttaaaagaacttatgtgtgaccaaaataac 4943138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 5746263 - 5746344
Alignment:
Q  174 ttgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    ||||||||||||  ||||||||| |||| || |||||| |||||||||| ||| ||||| ||||| ||| | ||||||||||    
T  5746263 ttgtttttgtaacgtttggttaacagaaagactaaattaaaaacgtttacaaacttaaatgacttatgtatgaccaaaataa 5746344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 28559417 - 28559473
Alignment:
Q  199 gaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||| ||||||||||||||||| ||| ||||||||||| ||||| || |||||||    
T  28559417 gaatgactaaattgaaaacgtttataaacttaaaggacttatgtgtgactaaaataa 28559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 37642961 - 37642893
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||| ||||| ||||||||||| ||| |||||||| || | ||  |||||||||||    
T  37642961 tttggttaatagaatgactaaatcgaaaacgtttacaaacttaaaggatttatttgagaccaaaataac 37642893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 17400724 - 17400771
Alignment:
Q  197 tagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgt 244  Q
    ||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  17400724 tagaaggactaaattgaaaacgtttacaaatttaaaggacttatgtgt 17400771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 14604233 - 14604164
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataaca 257  Q
    ||||||||| |||| || |||||||| ||  |||| ||||||||||||||| | ||| ||||||||||||    
T  14604233 tttggttaacagaaggactaaattgataaaatttacaaatttaaaggacttatatgtgaccaaaataaca 14604164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 36759859 - 36759888
Alignment:
Q  7 aagagttcaaggaagttgttatcaattatt 36  Q
    ||||||||||||||||||||||||||||||    
T  36759859 aagagttcaaggaagttgttatcaattatt 36759888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 38680773 - 38680724
Alignment:
Q  207 aaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||| ||||| |||||||||||| || ||| |||||||||||||    
T  38680773 aaattgaaaatgtttacaaatttaaaggatttttgtataaccaaaataac 38680724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 12713055 - 12713099
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaa 232  Q
    ||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  12713055 tttggttaacagaatgactaaattgaaaacgtttacaaacttaaa 12713099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 12774319 - 12774363
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaa 232  Q
    ||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  12774319 tttggttaacagaatgactaaattgaaaacgtttacaaacttaaa 12774363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 24793166 - 24793061
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaacca 249  Q
    |||||||||||||| ||||||| ||||||||| |||| ||||||||| | ||||| |||||||||||  |||| |||||||||| |||| ||||||||||    
T  24793166 atcatacacttaacagtcacataattgtttttttaatgtttggttaacataatgattaaattgaaaatttttacaaatttaaagtacttatgtgtaacca 24793067  T
Q  250 aaataa 255  Q
    ||||||    
T  24793066 aaataa 24793061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 14550189 - 14550101
Alignment:
Q  164 tgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaa 252  Q
    |||||||||||  |||||| ||| ||||||||| |||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  14550189 tgtcacatcatcatttttgcaatgtttggttaacagaaggaataaattgaaaacgtttacaaacttaaaggacttatgtgtaaccaaaa 14550101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 15563991 - 15564079
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||| ||||||||||||| ||| ||||| ||||| | |||||| |||||| ||| ||||||||||||||| |||||||| ||||||||    
T  15563991 cacatctttgtttttgtaatgtttagttaacagaataactaaattaaaaacg-ttacaaatttaaaggacttatgtgtaacaaaaataac 15564079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 36052992 - 36053085
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||  |||||||||| ||||||||| ||||||| || ||||||||| |||| ||| |||||| |||| ||||| || ||||||||    
T  36052992 ctgtcacatcatcatttttgtaatgtttggttaacagaatgactagattgaaaacttttacaaacttaaagaacttatgtgtgactaaaataac 36053085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 22813443 - 22813531
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggactt 238  Q
    |||||||||||||||  |||||||| ||||||||||| |||||||||   ||  | ||||||||||||||||| ||| |||||||||||    
T  22813443 atcatacacttaactaccacatcatcgtttttgtaatgtttggttaacctaaaaactaaattgaaaacgtttacaaacttaaaggactt 22813531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 9399985 - 9400065
Alignment:
Q  177 tttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaa-tttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||| |||||||||  |||||| ||||||||||| ||||| ||| || ||||||||| ||||| |||||||||||    
T  9399985 tttttgtaatgtttggttaacggaatgactaaattgaaaaggtttacaaacttaaaaggacttatgtgtgaccaaaataac 9400065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 14895003 - 14895069
Alignment:
Q  189 ttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||| || || |||||  |||||||||    
T  14895003 ttggttaagagaatgactaaattgaaaacgtttacaaatttaaaagatttatgtgtggccaaaataa 14895069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 41151572 - 41151504
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| |||| || |||||||||||| |||| |||  |||||||||| ||||| |||||||||||    
T  41151572 tttggttaacagaaggactaaattgaaaacatttacaaacataaaggacttatgtgtgaccaaaataac 41151504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 24827518 - 24827564
Alignment:
Q  168 acatcattgtttttgtaatatttggttaatagaatgaataaattgaa 214  Q
    ||||||| |||||||||| ||||||||||||||| || |||||||||    
T  24827518 acatcatcgtttttgtaacatttggttaatagaaggactaaattgaa 24827564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 27128023 - 27127973
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  27128023 taaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataac 27127973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 45787179 - 45787272
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||| |||||  |||| ||||| | |||||||||    
T  45787179 ctgtcacatcattgtttttgtaatatttggttaaaagaatgactaaattgaaaacgtttgcaaacttaaaaaacttatgtgtgatcaaaataac 45787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 17232132 - 17231968
Alignment:
Q  151 tcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaa 250  Q
    |||| ||||| |||| |||||||| ||||||||||| ||||||||| ||||  | ||||||||||||||||| ||| ||||| ||||| ||||| | |||    
T  17232132 tcatgcacttgactgccacatcatcgtttttgtaatgtttggttaacagaagaactaaattgaaaacgtttacaaacttaaaagacttatgtgtgatcaa 17232033  T
Q  251 aataac-----agagttatttattacaaacctcaaacttaaaggattcttatgatgtaatttagcct 312  Q
    ||||||     ||| |||| | ||||||||||||||||||||| |  ||  ||||||||||||||||    
T  17232032 aataacttaaaagacttatctgttacaaacctcaaacttaaagaa--ctgctgatgtaatttagcct 17231968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 40119661 - 40119579
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaa 232  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||| | || || ||||||||||||||||| ||| |||||    
T  40119661 atcatacacttaattgtcacatcattgattttgtaatatttggttaacataaggactaaattgaaaacgtttataaacttaaa 40119579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 12592371 - 12592278
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||| ||| | || || ||||| |||||||||||    
T  12592371 ctgtcacatcatcgtttttgtaatgtttggttgacagaatgactaaattgaaaacgtttacaaacttacaagatttatgtgtgaccaaaataac 12592278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 40119716 - 40119785
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtat-atgccttcgaattgaggttcataaaaaatga 75  Q
    |||||||||||||||||||||||||||||| |||| || ||| |||||| |||||||||||||| |||||    
T  40119716 aagagttcaaggaagttgttatcaattattttgtgaataatggcttcgatttgaggttcataaagaatga 40119785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 40147143 - 40147050
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| ||||||||||| ||||||||| | || ||||||| ||||||| |||| ||  ||||||||||  ||||| |||||||||||    
T  40147143 ctgtcacatcatcgtttttgtaatgtttggttaacataaggaataaactgaaaacatttacaaccttaaaggactcatgtgtgaccaaaataac 40147050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 51950661 - 51950569
Alignment:
Q  164 tgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||  |||||||||  | | |||||||||| || |||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  51950661 tgtcacatcatcatttttgtaacgtctcgttaatagaaggactaaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataac 51950569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 45038356 - 45038414
Alignment:
Q  198 agaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  45038356 agaatgactaaatcgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataac 45038414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 24684199 - 24684147
Alignment:
Q  204 aataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||||| ||| ||||| || || |||||||||||||||||    
T  24684199 aataaattgaaaacgtttacaaacttaaaagatttatgtgtaaccaaaataac 24684147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 50290278 - 50290325
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaat 210  Q
    ||||||||||||  |||||||||||||||||||| | |||||||||||    
T  50290278 ctgtcacatcatcatttttgtaatatttggttaacataatgaataaat 50290325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 40395275 - 40395325
Alignment:
Q  194 taatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgt 244  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||| |||||    
T  40395275 taatagaaggactaaatcgaaaacgtttacaaatttaaaggacttatgtgt 40395325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 41519320 - 41519258
Alignment:
Q  176 gtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggactt 238  Q
    ||||||||||| ||||||||| | || ||  |||||||||||||||| ||| |||||||||||    
T  41519320 gtttttgtaatgtttggttaacataaagaccaaattgaaaacgtttacaaacttaaaggactt 41519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 2788072 - 2787984
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| | ||||||| | ||||||||| |||| || ||| |||||||| |||| ||| ||||| ||||| ||||| |||||||||||    
T  2788072 cacatcatcggttttgtagtgtttggttaacagaaagactaa-ttgaaaacatttacaaacttaaatgacttatgtgtgaccaaaataac 2787984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 12498796 - 12498857
Alignment:
Q  194 taatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||| || ||||| ||||||||||| ||||||||| ||||| ||||| ||| ||||||    
T  12498796 taatagaaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataa 12498857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 40120705 - 40120746
Alignment:
Q  91 agttggttgcaaggatgtatgtccttggattgttttatgttc 132  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||    
T  40120705 agttggttggaaggatgaatgtctttggattgttttatgttc 40120746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 51950663 - 51950719
Alignment:
Q  200 aatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||| ||||||||||| ||||| ||| ||||||||||| ||| |||||||| ||||    
T  51950663 aatgactaaattgaaaatgtttacaaacttaaaggacttatgtataaccaaattaac 51950719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 43258405 - 43258492
Alignment:
Q  168 acatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    ||||||| ||||||||||||||| ||||| ||||||| |||||| |||||||||| ||| ||||||||||| ||||| | ||||||||    
T  43258405 acatcatcgtttttgtaatattttgttaacagaatgactaaattaaaaacgtttaaaaacttaaaggacttatgtgtgatcaaaataa 43258492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 27280802 - 27280713
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| ||||||||||| |||||||||  |||||| ||||| ||||||||||| ||| |||||||||||  |||| |||||||||||    
T  27280802 cacatcatcgtttttgtaatgtttggttaactgaatgactaaatcgaaaacgtttacaaacttaaaggacttacgtgttaccaaaataac 27280713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 29019415 - 29019347
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  29019415 tttgattaacagaatgactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataac 29019347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 23164031 - 23164097
Alignment:
Q  150 atcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaa 216  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||| |  || |||||||||||||    
T  23164031 atcatacacttaactgtcacatcatcgtttttgtaacatttgattaacaacataaataaattgaaaa 23164097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 22026646 - 22026521
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtat-atgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaagga 105  Q
    |||||||||| ||||||||||||||||||| ||||||| ||   ||||| |||||||| ||||| ||| | ||| ||||||  | ||||  |||||| ||    
T  22026646 aagagttcaatgaagttgttatcaattattttgtgtataattgtttcgatttgaggttgataaagaatcacaattagagggcgagagtttattgcaaaga 22026547  T
Q  106 tgtatgtccttggattgttttatgtt 131  Q
    || ||||| |||| ||||||||||||    
T  22026546 tggatgtctttggtttgttttatgtt 22026521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 26978425 - 26978287
Alignment:
Q  148 atatcatacacttaactgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaac 247  Q
    |||||||||||||||||||||       ||||||||||  |||||||||  ||| |  |||||||||||||| || ||| ||||||||||||||||| ||    
T  26978425 atatcatacacttaactgtcaa------gtttttgtaacgtttggttaaccgaaggtttaaattgaaaacgtctacaaacttaaaggacttgtgtgttac 26978332  T
Q  248 caaaata-----acagagttatttattacaaacctcaaacttaaa 287  Q
    |||||||     |||||  |||||||||||||||| ||| |||||    
T  26978331 caaaatattttaacagacctatttattacaaaccttaaatttaaa 26978287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 3198396 - 3198273
Alignment:
Q  170 atcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagttat 264  Q
    ||||| ||||||||||| ||||||||| || |||| ||||||||||| ||||| ||| || ||| |||| ||||  |||||||||||     |||   ||    
T  3198396 atcatcgtttttgtaatgtttggttaacaggatgattaaattgaaaatgtttacaaactttaagaacttatgtgggaccaaaataacttaaaagaccaat 3198297  T
Q  265 ttattacaaacctcaaacttaaag 288  Q
    || |||||||||||||||||||||    
T  3198296 ttgttacaaacctcaaacttaaag 3198273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 40951786 - 40951882
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaat---agaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| ||||||||||| ||||||||||   | ||||| ||||| ||||| ||||| ||| ||||| || || ||||| |||||||||||    
T  40951786 ctgtcacatcatcgtttttgtaatgtttggttaattacataatgactaaatagaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataac 40951882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 4048390 - 4048322
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaagga 235  Q
    ||||||||  |||||||||| ||||||||| | ||||| ||||||||||||||||| ||| || |||||    
T  4048390 cacatcatcatttttgtaatgtttggttaacaaaatgactaaattgaaaacgtttacaaacttcaagga 4048322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 4048392 - 4048451
Alignment:
Q  197 tagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||| || ||||| ||||| ||||| ||| ||||||||||| |||||||||||||||||    
T  4048392 tagaaagactaaatcgaaaatgtttacaaacttaaaggacttatgtgtaaccaaaataac 4048451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 6694717 - 6694768
Alignment:
Q  205 ataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  6694717 ataaatcgaaaacgtttataaacttaaaggacttatgtgtgaccaaaataac 6694768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 30869557 - 30869620
Alignment:
Q  175 tgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggactt 238  Q
    |||||||||||| ||||||||| | || || ||||||||||| ||||| ||| |||||||||||    
T  30869557 tgtttttgtaatgtttggttaacaaaaagactaaattgaaaatgtttacaaacttaaaggactt 30869620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 11975596 - 11975546
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||| ||| ||||||||||| ||||| |||| ||||||    
T  11975596 taaattgaaaacgtttaaaaacttaaaggacttatgtgtgaccacaataac 11975546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 27576520 - 27576569
Alignment:
Q  207 aaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  27576520 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataac 27576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 42312908 - 42312859
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||||||| |||| ||||||||||||||| ||||| || |||||||    
T  42312908 taaattgaaaacttttacaaatttaaaggacttatgtgtgacaaaaataa 42312859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 6694697 - 6694630
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | || || ||||||||||||||||  ||| ||||||||||| ||||||| |||||||||    
T  6694697 tttggttaacataaagactaaattgaaaacgtttgcaaacttaaaggacttatgtgtaa-caaaataac 6694630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 30869476 - 30869448
Alignment:
Q  228 ttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||||||||||||||||||||    
T  30869476 ttaaaggacttgtgtgtaaccaaaataac 30869448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 47891266 - 47891358
Alignment:
Q  164 tgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||| ||||||||||  ||||||||| | || || ||||||||||||||||| ||| ||||| ||||| ||||| |||||||||||    
T  47891266 tgtcacatcatcgtttttgtaacgtttggttaacataaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataac 47891358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 26976496 - 26976376
Alignment:
Q  175 tgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac--agag---ttatttatt 269  Q
    |||||||||||| |||||||||||||| |  ||||||||||||| ||| ||| ||||| || || |||||||||||||||||  ||||    ||| | ||    
T  26976496 tgtttttgtaatgtttggttaatagaaggtctaaattgaaaacgattacaaacttaaaagatttttgtgtaaccaaaataacttagaggacctatctgtt 26976397  T
Q  270 acaaacctcaaacttaaagga 290  Q
    |||||||||||||||||||||    
T  26976396 acaaacctcaaacttaaagga 26976376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 40286394 - 40286474
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtg 243  Q
    |||||||||||| ||||||||||| ||||||||||||||  | ||||||||||| ||||| ||| |||||| |||| ||||    
T  40286394 ctgtcacatcatcgtttttgtaatgtttggttaatagaagaactaaattgaaaatgtttacaaacttaaagaacttatgtg 40286474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 13902992 - 13903083
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagttatttattacaaacctcaaacttaaaggatt 292  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||     ||| | || | |||||||||||| ||||||||||||    
T  13902992 taaattgaaaacgtttacaaatttaaaggacttatatgtaaccaaaataacttaaaagactaatatgttacaaacctcagacttaaaggatt 13903083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 25848457 - 25848536
Alignment:
Q  177 tttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||| ||||||||| |||| || |||||||||||| |||| ||| ||||||||| | ||||| |||||||||||    
T  25848457 tttttgtaatgtttggttaacagaaggactaaattgaaaacatttacaaacttaaaggacatatgtgtgaccaaaataac 25848536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 3378942 - 3379068
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtat-atgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaagga 105  Q
    ||||||||||||||| |||||| ||||||||||||| | ||| || | | ||||||||||||||  |||| ||  ||||||| | ||||||||| |||||    
T  3378942 aagagttcaaggaagctgttataaattattctgtgtgtaatggctacaatttgaggttcataaaggatgataaaaagagggttagagttggttgtaagga 3379041  T
Q  106 tgtatgtccttggattgttttatgttc 132  Q
       ||| |||||||||| |||||||||    
T  3379042 cagatgaccttggattgctttatgttc 3379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 36900031 - 36900091
Alignment:
Q  175 tgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaagga 235  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| ||||| ||| ||||||||    
T  36900031 tgtttttgtaatgtttggttaacagaatgactaaattgaaaatgtttacaaacttaaagga 36900091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 28814027 - 28813936
Alignment:
Q  165 gtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||| ||| ||||||||||  ||||||||| | ||  | ||||||||||||||||| ||| || |||||||| ||||| |||||||||||    
T  28814027 gtcacaccatcgtttttgtaacgtttggttaacataaatactaaattgaaaacgtttacaaacttgaaggacttatgtgtgaccaaaataac 28813936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 43650144 - 43650234
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaat-ttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||| ||||||||||| ||| ||||| |||| || ||| |||||||  |||| |||| ||||||||||| ||||| |||||||||||    
T  43650144 cacatcatcgtttttgtaatgttttgttaacagaaggactaagttgaaaagatttacaaatcttaaaggacttatgtgttaccaaaataac 43650234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 32186622 - 32186711
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||  ||||||| |  ||||||||| | || || ||||||||||||||||| ||| |||||| | || |||||||||||||||||    
T  32186622 cacatcatcatttttgttacgtttggttaacaaaaagactaaattgaaaacgtttacaaacttaaagaatttatgtgtaaccaaaataac 32186711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 5442648 - 5442554
Alignment:
Q  163 ctgtcacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaa-tttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| ||||||||||| || |||||| | ||  | |||||||||||| |||| ||| |||||| ||||| | ||| |||||||||||    
T  5442648 ctgtcacatcatcgtttttgtaatgttgggttaacataagaactaaattgaaaacatttacaaattttaaaagacttatctgtgaccaaaataac 5442554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 14964978 - 14964928
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    |||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  14964978 taaattgaaaacctttacaaacttaaaggacttatgtgtgaccaaaataac 14964928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 26724167 - 26724109
Alignment:
Q  198 agaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| |||||||||||| |||| ||| ||||||||||| | ||| |||||||||||    
T  26724167 agaatgactaaattgaaaacttttataaacttaaaggacttatatgtgaccaaaataac 26724109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 47069699 - 47069749
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggactt 238  Q
    ||||||||| | ||||| ||||||||||||||||| ||| |||||||||||    
T  47069699 tttggttaacataatgactaaattgaaaacgtttacaaacttaaaggactt 47069749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 36374970 - 36374905
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaat 253  Q
    ||||||||||| ||||| ||||| |||||| |||| |||||||||||| || | ||| ||||||||    
T  36374970 tttggttaataaaatgactaaatcgaaaacttttacaaatttaaaggatttatttgtgaccaaaat 36374905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 18019992 - 18020060
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | || || ||||||||||| ||||  ||| ||||| ||||| |||||||||||||||||    
T  18019992 tttggttaacataaggactaaattgaaaaggtttgcaaacttaaaagacttatgtgtaaccaaaataac 18020060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 5197537 - 5197663
Alignment:
Q  7 aagagttcaaggaagttgttatcaattattctgtgtata-tgccttcgaattgaggttcataaaaaatgaaaatgagagggtcaaagttggttgcaagga 105  Q
    ||||||||||||||| |||||| ||||||||||||| || || || | | ||||||||||||||  |||| ||  ||||||| | ||||||||| |||||    
T  5197537 aagagttcaaggaagctgttataaattattctgtgtgtaatggctacaatttgaggttcataaaggatgataaaaagagggttagagttggttgtaagga 5197636  T
Q  106 tgtatgtccttggattgttttatgttc 132  Q
       |||||||||||||| |||||||||    
T  5197637 cagatgtccttggattgctttatgttc 5197663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 24059853 - 24059765
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    ||||||||  |||||||||  |||||||||||||| || || ||| |||||||||| ||| ||||||||||| ||||| ||||||||||    
T  24059853 cacatcatcatttttgtaacttttggttaatagaaggactagattaaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataa 24059765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 3848672 - 3848526
Alignment:
Q  171 tcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac-----agagttatt 265  Q
    ||||||||||||||| |||||||||| | || || |||||||||| |||||| ||| |||||||  || | ||||| |||| ||||      ||  ||||    
T  3848672 tcattgtttttgtaacatttggttaacaaaaggactaaattgaaaccgtttacaaacttaaaggtattatatgtaagcaaactaacttaaatgacctatt 3848573  T
Q  266 tattacaaacctcaaacttaaaggattcttatgatgtaatttagcctaa 314  Q
    | |||||||||||||||||||||||  |  |||||||||||||||||||    
T  3848572 ttttacaaacctcaaacttaaagga--ccaatgatgtaatttagcctaa 3848526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 21598616 - 21598684
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | || || ||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  21598616 tttggttaacataaggactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataac 21598684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 17342621 - 17342679
Alignment:
Q  198 agaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||    
T  17342621 agaatgactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataac 17342679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 364173 - 364088
Alignment:
Q  167 cacatcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaa 252  Q
    ||||||||  |||||||||  ||||||||||||||||| ||| ||||||| ||||| ||| |||||| |||| | ||| |||||||    
T  364173 cacatcatcatttttgtaacgtttggttaatagaatgattaagttgaaaatgtttacaaacttaaagaacttatttgtgaccaaaa 364088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 17137011 - 17136943
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||| | || || ||||||||||||||||| ||| ||||| ||||| ||||| |||||||||||    
T  17137011 tttggttaacaaaaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataac 17136943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 2761550 - 2761500
Alignment:
Q  206 taaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||||||||| ||| ||||||||||| ||||| | |||||||||    
T  2761550 taaattgaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataac 2761500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 2761574 - 2761640
Alignment:
Q  190 tggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||| |||| || ||||||||||||||||| ||| |||||||| || ||||| | |||||||||    
T  2761574 tggttaacagaaggactaaattgaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataac 2761640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 161575 - 161643
Alignment:
Q  188 tttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||| ||| ||||||| |||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  161575 tttggctaacagaatgactaaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataac 161643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 2566 - 2481
Alignment:
Q  170 atcattgtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    ||||| ||||||||||| |||||||||||||| || || || | ||||||||| ||| |||||| |||| ||||| || |||||||    
T  2566 atcatcgtttttgtaatgtttggttaatagaaggactagataggaaacgtttacaaacttaaagaacttatgtgtgactaaaataa 2481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 1124 - 1173
Alignment:
Q  207 aaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataac 256  Q
    ||||||||||| |||| ||| ||||||||||| ||||| |||||||||||    
T  1124 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataac 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 21681 - 21620
Alignment:
Q  194 taatagaatgaataaattgaaaacgtttagaaatttaaaggacttgtgtgtaaccaaaataa 255  Q
    |||||||| || ||||| ||||||||||| ||||||||| ||||| ||||| ||| ||||||    
T  21681 taatagaaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataa 21620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 1407 - 1351
Alignment:
Q  176 gtttttgtaatatttggttaatagaatgaataaattgaaaacgtttagaaatttaaa 232  Q
    ||||||||||  ||||||||| | ||||| ||||||||||||||||| ||| |||||    
T  1407 gtttttgtaacgtttggttaagacaatgactaaattgaaaacgtttataaacttaaa 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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