View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9297_low_8 (Length: 380)
Name: NF9297_low_8
Description: NF9297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9297_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 33033093 - 33032732
Alignment:
| Q |
1 |
tgtaattaaatcaaaaaacatggtacataaatgtgtatctatgccaagactaattgtctttcacaaaggagacaaatcataggatgattatgttcactaa |
100 |
Q |
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| T |
33033093 |
tgtaattaaatcaaaaaacatggtaaataaatgtgtatctatgccaagactaattgtctttcacaaaggagacaaatcataggatgattatgttcactaa |
33032994 |
T |
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| Q |
101 |
cacaataatttcttgttttcatgatatcttcatatgagctcataggttatcctaattgcaggacaaaataaaattttcactgctaaagcatgaaacaaaa |
200 |
Q |
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| T |
33032993 |
cacaataatttcttgttttcatgatatcttcatatgagctcataggttatcctaattgcaggacaaaataaaattttcactgctaaagcatgaaacaaaa |
33032894 |
T |
|
| Q |
201 |
cattgatcttgaagtagaagcttgtgcagaatatgaatctgaagttacaagccaacttgattctaatgtatcaactcaagaaaccttttacaacatcaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33032893 |
cattgatcttgaagtagaagcttgtgcagaatatgaatctgaagttacaagccaagttgattctaatgtatcaactcaagaaaccttttacaacatcaca |
33032794 |
T |
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| Q |
301 |
aatcctaattcatatgatatatctcttgacttaagtctaaatttcaagaacagtgagatacc |
362 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33032793 |
aatcctaattcatatgatatatctcttgacctaagtctaaatttcaagaacagtgagatacc |
33032732 |
T |
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