View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_1 (Length: 620)
Name: NF9298_low_1
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 128 - 464
Target Start/End: Complemental strand, 22402969 - 22402633
Alignment:
| Q |
128 |
tgtttgaaggttgttattgtttctcagccactgctgagcaattaggaggattgactaggtaaatagcaatgtgtatttggctatctaattaggcaacaaa |
227 |
Q |
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| T |
22402969 |
tgtttaaaggttgttattgtttctcagccactactgaacaattaggaggattgactaggtaaatagcaacgtgtatttggctatctaattaggcaacaaa |
22402870 |
T |
|
| Q |
228 |
agaacgtgtagcattaatatgactaattgatgagggagaactaacataacgtgtgccttggtcttgctctttaactcctataaccaaaataatgtgttcc |
327 |
Q |
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| T |
22402869 |
agaacgtgtagcattaatatgattaattgatgagggagaactagaataacgtgtgccttggtcttgctctttaactcctataaccaaaataatatgttcc |
22402770 |
T |
|
| Q |
328 |
taaaaatttggatcttatgcccacgtctttggcaactagaaggaatataacatgagggagaactagaattttagaacagataagaataagtctcgcacgt |
427 |
Q |
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| T |
22402769 |
taaacatttggaacttatgcccacgtctttggcaactagaaggaatataacatgagggagaactagaattttagaactgataagaataagtctctcaagt |
22402670 |
T |
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| Q |
428 |
gtgtttacaacctaccaaggaatggttcaactttgac |
464 |
Q |
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| T |
22402669 |
gtgtttacaacctaccaaggaatggttcaactttgac |
22402633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 22403125 - 22403022
Alignment:
| Q |
22 |
tatatattgatagtggagaaagatgaggtggtcgtgtagtccaaggaagagaattgtaaatccaatttccaggaaaagactatcccatgatttctactaa |
121 |
Q |
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| T |
22403125 |
tatatattgatagtagagaaagatgagttggtcgtgtagtccaaggaagagaattgtaaatcaaatttctaggaaaagactctcccatgatttctactaa |
22403026 |
T |
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| Q |
122 |
tgtt |
125 |
Q |
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|||| |
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| T |
22403025 |
tgtt |
22403022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 534 - 618
Target Start/End: Complemental strand, 22402564 - 22402480
Alignment:
| Q |
534 |
ggtaacactgcatccaataaactattagataaataaataaatgatacatcaataaaattataaaactgacgattataaatatcgg |
618 |
Q |
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| T |
22402564 |
ggtaatacttcatcaaataaactattagataaataaataaatgatacatcaataaaattataaaactgacgattataaatatcgg |
22402480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 31205875 - 31205756
Alignment:
| Q |
134 |
aaggttgttattgtttctcagccactgctgagcaattaggaggattgactaggtaaatagcaatgtgtatttggctatctaattaggcaacaaaagaacg |
233 |
Q |
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|||||||||||| ||||| |||||| | |||||||||||||||| ||||||| |||| |||| ||||||||| |||||||||||||||||||||||||| |
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| T |
31205875 |
aaggttgttattagttctccgccactaccgagcaattaggaggatggactaggaaaattgcaaggtgtatttgactatctaattaggcaacaaaagaacg |
31205776 |
T |
|
| Q |
234 |
tgtagcat-taatatgacta |
252 |
Q |
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|||||||| ||||||||||| |
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| T |
31205775 |
tgtagcatataatatgacta |
31205756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 21510341 - 21510302
Alignment:
| Q |
285 |
ttggtcttgctctttaactcctataaccaaaataatgtgt |
324 |
Q |
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| T |
21510341 |
ttggtcttgctctttaactcctttaaccaaaataatgtgt |
21510302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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