View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9298_low_13 (Length: 320)

Name: NF9298_low_13
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9298_low_13
NF9298_low_13
[»] chr5 (10 HSPs)
chr5 (17-314)||(15083949-15084246)
chr5 (17-314)||(15428402-15428699)
chr5 (24-238)||(15336637-15336851)
chr5 (26-238)||(15348015-15348227)
chr5 (25-281)||(15332190-15332446)
chr5 (26-276)||(15358284-15358534)
chr5 (26-235)||(16415007-16415216)
chr5 (26-271)||(16397682-16397927)
chr5 (29-252)||(15452306-15452529)
chr5 (209-252)||(16404459-16404502)
[»] chr3 (1 HSPs)
chr3 (36-276)||(8188125-8188365)
[»] chr4 (1 HSPs)
chr4 (258-314)||(18688709-18688765)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 15083949 - 15084246
Alignment:
Q  17 agcttccctaaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  15083949 agcttccctaaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttgagaaatgattgaggtggtttggcaccagtcaagg 15084048  T
Q  117 actccgcttctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15084049 actccgcttctcttttctctgactatctcagtcaaatgaaacttggtcttttcttcagctatttcatccaacctctctcgtatgctcttcattttcttag 15084148  T
Q  217 caattttgtaacgaaaagcaacttgttttggatgaagatatgataggaaagagctttgtagcttaccatgtagtccacccttggatcctctgtgctcc 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  15084149 caattttgtaacgaaaagcaacttgttttggatgaagagatgatacgcaagagctttgtagcttaccatgtagtccacccatggatcctctgtactcc 15084246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 15428699 - 15428402
Alignment:
Q  17 agcttccctaaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaagg 116  Q
    |||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| | | ||    
T  15428699 agcttcaccaaccaaaaaatctacaattttatccatatctttatctcttccatagacttgaggttgagaaatgattgaggttgtttggcgccaattaggg 15428600  T
Q  117 actccgcttctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttag 216  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||| || ||||| ||||||||||||| ||||||||||| ||| |||||||||||||||    
T  15428599 actccgcttctcttctctctgactatctcggtcaaatgaaatttgattctttctgcagctatttcatctaacctctctcgtatgttcttcattttcttag 15428500  T
Q  217 caattttgtaacgaaaagcaacttgttttggatgaagatatgataggaaagagctttgtagcttaccatgtagtccacccttggatcctctgtgctcc 314  Q
    ||||||||||||| ||||||||||| |||||||||||| |  |||   ||||||| |||||||||  | |||||||||||||||||||| ||| ||||    
T  15428499 caattttgtaacggaaagcaacttgctttggatgaagagaacataaacaagagctatgtagcttatgacgtagtccacccttggatcctttgtactcc 15428402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 15336637 - 15336851
Alignment:
Q  24 ctaaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgc 123  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||| |  ||||||||| |||||||| |||||||||||||||||||    
T  15336637 ctaaccaaaaactctacaattttattcttatcttcatctcttccataaacttgacgttgattaatgattgaagtggtttgccgccagtcaaggactccgc 15336736  T
Q  124 ttctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaatttt 223  Q
    ||||||| ||||||||||||||| |||||||||||||| || ||||||| ||||| |||||||| ||||| |  ||||||||||||||||||||||||||    
T  15336737 ttctcttctctctgactatctcaatcaaatgaaacttgcttctttcttctgctatctcatccaatctctcccttatgctcttcattttcttagcaatttt 15336836  T
Q  224 gtaacgaaaagcaac 238  Q
    |||||| ||||||||    
T  15336837 gtaacggaaagcaac 15336851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 15348015 - 15348227
Alignment:
Q  26 aaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgctt 125  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||| |||||||||| || ||| |||||||||||||| ||||||||||||||| | | |    
T  15348015 aaccaaaaagtctacaattttactcttatcttcatctcttccataaacttgaggttgagtaataattgaggtggtttgtcgccagtcaaggacttcacat 15348114  T
Q  126 ctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgt 225  Q
    ||| |||||||||||||||||||||||||||||||  |  |||||||||||||| ||||||| ||||| |  || ||||| |||||||||||||||||||    
T  15348115 ctcctttctctgactatctcagtcaaatgaaacttactcctttcttcagctattccatccaatctctcccttatcctcttaattttcttagcaattttgt 15348214  T
Q  226 aacgaaaagcaac 238  Q
    |||| ||||||||    
T  15348215 aacggaaagcaac 15348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 15332190 - 15332446
Alignment:
Q  25 taaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgct 124  Q
    ||||||||| |||||| ||||||||| ||||  ||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||| ||||||       
T  15332190 taaccaaaatatctaccattttatccctatcaccatctcttccgaagacttgaggttgagaaatgattgaggttgtttggcgccagtcaatgactccatc 15332289  T
Q  125 tctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttg 224  Q
    |||||| ||| | || || ||| |||||||||||||  |  ||||||||||||||||||  || |||||||| ||||| |||||||||||||||||||||    
T  15332290 tctcttctctttaaccatttcaatcaaatgaaacttactcctttcttcagctatttcatttaatctctctcgtatgcttttcattttcttagcaattttg 15332389  T
Q  225 taacgaaaagcaacttgttttggatgaagatatgataggaaagagctttgtagctta 281  Q
    ||||| |||||||| || |||||||||| | | |||| |||||||||||||| ||||    
T  15332390 taacggaaagcaacatgctttggatgaaaagaggatacgaaagagctttgtacctta 15332446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 15358284 - 15358534
Alignment:
Q  26 aaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgctt 125  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| | |||||||||| ||  ||  ||||||||||||| ||||||||||| || ||||||    
T  15358284 aaccaaaaagtctacaatttgatccttatcttcatttcttccaaaaacttgaggttgagtgatatttgaggtggtttgtcgccagtcaagaaccccgctt 15358383  T
Q  126 ctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgt 225  Q
    ||  | ||||| |||||||||||||||||||||||  |  |||||||||||||||||||||| |||||||  || || |||||||||||||||| |||||    
T  15358384 cttctctctctcactatctcagtcaaatgaaacttactcctttcttcagctatttcatccaatctctctcttattcttttcattttcttagcaagtttgt 15358483  T
Q  226 aacgaaaagcaacttgttttggatgaagatatgataggaaagagctttgta 276  Q
    |||| |||||||| || || ||||||| | | |||| |||| |||||||||    
T  15358484 aacggaaagcaacatgcttaggatgaaaagaagatacgaaaaagctttgta 15358534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 16415007 - 16415216
Alignment:
Q  26 aaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgctt 125  Q
    ||||||||| || |||||||||| ||| ||||||||||||||||||| | | |||| || |||||||||||||||||||||||||||||||||||| |||    
T  16415007 aaccaaaaattccacaattttattcttctcttcatctcttccatagattcgtggttgagtaatgattgaggtggtttggcgccagtcaaggactccactt 16415106  T
Q  126 ctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgt 225  Q
    ||||| ||| ||||||||||||||||||||||| |  |  ||||||| |||||||||| ||| || || |  ||  ||||||||||||||||||||||||    
T  16415107 ctcttctctttgactatctcagtcaaatgaaacatactcctttcttcggctatttcattcaatctgtcccttatcttcttcattttcttagcaattttgt 16415206  T
Q  226 aacgaaaagc 235  Q
    |||| |||||    
T  16415207 aacggaaagc 16415216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 271
Target Start/End: Original strand, 16397682 - 16397927
Alignment:
Q  26 aaccaaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgctt 125  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||  ||||| || || ||||||||||||||| ||||||||  ||||| | |      
T  16397682 aaccaaaaagtctacaattttatccttatcttcgtttcttccatagactaaaggttgagtaacgattgaggtggtttgtcgccagtctgggactactcca 16397781  T
Q  126 ctcttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgt 225  Q
    ||  | ||||| || |||||||| |||||||||||  | |||||| |||| || ||||| ||||   |||  || ||||||||||||||||||| |||||    
T  16397782 cttctctctctaacgatctcagttaaatgaaacttattcttttctgcagcaatgtcatctaaccagactcctatcctcttcattttcttagcaagtttgt 16397881  T
Q  226 aacgaaaagcaacttgttttggatgaagatatgataggaaagagct 271  Q
    |||| |||||||  || |||||||||| | | ||||||||||||||    
T  16397882 aacggaaagcaatatgctttggatgaaaagaggataggaaagagct 16397927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 15452529 - 15452306
Alignment:
Q  29 caaaaaatctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgcttctc 128  Q
    |||||| |||||||||||||||||||| || ||||||||||  |||  || || |  |||||||||||||||||||||||| || |||||||| | |||     
T  15452529 caaaaagtctacaattttatccttatcctcgtctcttccatgaactaaagtttgattaatgattgaggtggtttggcgccattctaggactccacctctt 15452430  T
Q  129 ttttctctgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgtaac 228  Q
     | ||||| || ||||| |||||||||||     | |||||   ||| |||| ||| ||||||||||  || ||| ||||||| ||||||| ||||||||    
T  15452429 ctctctctaaccatctccgtcaaatgaaatccactcttttcgaaagcgatttgatctaacctctctcttatcctcctcatttttttagcaagtttgtaac 15452330  T
Q  229 gaaaagcaacttgttttggatgaa 252  Q
    |||||||||| || || |||||||    
T  15452329 gaaaagcaacatgcttgggatgaa 15452306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 16404459 - 16404502
Alignment:
Q  209 tttcttagcaattttgtaacgaaaagcaacttgttttggatgaa 252  Q
    ||||||||||| |||||||||||||||||| || ||||||||||    
T  16404459 tttcttagcaagtttgtaacgaaaagcaacatgctttggatgaa 16404502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 8188125 - 8188365
Alignment:
Q  36 tctacaattttatccttatcttcatctcttccatagacttgaggttcagaaatgattgaggtggtttggcgccagtcaaggactccgcttctcttttctc 135  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||  ||||| |||||||| ||||    
T  8188125 tctataattttatccctatcttcatctcttccataaacttgaggttgagaaatgattgacgtggtttggcgccagtcaaatactccacttctcttctctc 8188224  T
Q  136 tgactatctcagtcaaatgaaacttggttttttcttcagctatttcatccaacctctctcgcatgctcttcattttcttagcaattttgtaacgaaaagc 235  Q
    | ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||| |||||||| |||||    
T  8188225 tcactatctcagtcaaatgaaacttagttctttcttcagcaatttcatccaacctctttcgtatcttcttcattttcttagcaatattgtaacggaaagc 8188324  T
Q  236 aacttgttttggatgaagatatgataggaaagagctttgta 276  Q
    ||| || || ||||||| | | |||| | ||||||||||||    
T  8188325 aacatgcttaggatgaaaagaggataagcaagagctttgta 8188365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 18688709 - 18688765
Alignment:
Q  258 gataggaaagagctttgtagcttaccatgtagtccacccttggatcctctgtgctcc 314  Q
    |||||| |||||||||||| |||| |  |||||||||||||||||||| ||| ||||    
T  18688709 gataggcaagagctttgtaccttatcgggtagtccacccttggatcctttgtactcc 18688765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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