View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9298_low_14 (Length: 258)

Name: NF9298_low_14
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9298_low_14
NF9298_low_14
[»] chr8 (6 HSPs)
chr8 (58-242)||(28691998-28692182)
chr8 (4-55)||(36042852-36042903)
chr8 (6-90)||(13236242-13236323)
chr8 (1-89)||(41849442-41849526)
chr8 (10-55)||(12181911-12181956)
chr8 (10-55)||(12426339-12426384)
[»] chr6 (4 HSPs)
chr6 (1-91)||(34540843-34540930)
chr6 (1-55)||(11274644-11274698)
chr6 (6-90)||(33344881-33344962)
chr6 (1-83)||(5608079-5608157)
[»] chr4 (3 HSPs)
chr4 (1-55)||(2113931-2113985)
chr4 (1-55)||(48653760-48653814)
chr4 (4-50)||(4596445-4596491)
[»] scaffold0777 (1 HSPs)
scaffold0777 (1-55)||(5937-5991)
[»] chr7 (3 HSPs)
chr7 (10-91)||(13431656-13431734)
chr7 (1-46)||(33480474-33480519)
chr7 (1-84)||(36066178-36066257)
[»] chr5 (2 HSPs)
chr5 (1-49)||(3193505-3193553)
chr5 (8-90)||(502862-502941)
[»] chr3 (2 HSPs)
chr3 (4-84)||(168672-168748)
chr3 (6-90)||(47000854-47000934)
[»] chr1 (1 HSPs)
chr1 (6-46)||(29062354-29062394)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 28692182 - 28691998
Alignment:
Q  58 tctagaaatatattttcagtagaattactcaaaatccaatcaacttttccaaaatgtagaacctctatgtggtggtgtgatgaggggcgtggccctcacc 157  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||    
T  28692182 tctagaaatatattttcagtagaattgctcaaaatgcaatcaacttttccaaaatgtagaacctctaggtggtggtgtgataagggtcgtggccctcgcc 28692083  T
Q  158 tccagatcgttgccggccgcaccgtcgttggttttggaagtaccggatcttttttgttgttcttttcgctgctcttccttctctg 242  Q
    ||||||||| || ||||| || ||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||    
T  28692082 tccagatcgctgtcggccacatcgtcgttagttttggaagtactagatctgttttgttgttcttttcgctgctcttccttttctg 28691998  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36042852 - 36042903
Alignment:
Q  4 tctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36042852 tctttcttcttgtattttttgttgcaaaaaattaattcataatcaaggttct 36042903  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 13236323 - 13236242
Alignment:
Q  6 tttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaa 90  Q
    |||||||||| ||| ||||||||||||||||  || ||||||||  |||   |||| ||||||||||||| |||||||| |||||    
T  13236323 tttcttcttgcattatttgttgcaaaaaattcgtttataatcaaagttc---tctaaaaatatattttcattagaattaatcaaa 13236242  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 41849526 - 41849442
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaa 89  Q
    ||||||||||| |||| |||||||||| |||| ||| ||| |||||||||||||   | || ||||||||||||| |||||||| ||||    
T  41849526 atgtctttctttttgt-ttttttgttgaaaaagattcattaataatcaagattc---tttaaaaatatattttcaatagaattaatcaa 41849442  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 12181956 - 12181911
Alignment:
Q  10 ttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    |||||||| |||||||||||||| ||| |||||||||||| |||||    
T  12181956 ttcttgtactttttgttgcaaaatattcattcataatcaaaattct 12181911  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 12426384 - 12426339
Alignment:
Q  10 ttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    |||||||| |||||||||||||| ||| |||||||||||| |||||    
T  12426384 ttcttgtactttttgttgcaaaatattcattcataatcaaaattct 12426339  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34540843 - 34540930
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaaa 91  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||   || || ||||||||||||| ||||| || ||||||    
T  34540843 atgtatttcttcatgtattttttgttgcaaaaaatttattcataatcaagatt---atttaaaaatatattttcaatagaactaatcaaaa 34540930  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11274698 - 11274644
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    |||| ||| |||||||| |||||||||||||| ||| |||||||||||| |||||    
T  11274698 atgttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattct 11274644  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 33344962 - 33344881
Alignment:
Q  6 tttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaa 90  Q
    |||||||| | |||||||||||||||| ||| ||| ||||||||  ||   ||||| ||||||||||||| |||||||| |||||    
T  33344962 tttcttctagcattttttgttgcaaaatattcatttataatcaaagtt---atctaaaaatatattttcaatagaattaatcaaa 33344881  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5608157 - 5608079
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaatt 83  Q
    ||||||||||| || ||||||||||| ||||| | | |||||||||||| ||||   |||||||||||||| ||| |||||||    
T  5608157 atgtctttctttttatattttttgttacaaaaga-tcattcataatcaaaattc---tctagaaatatattctcaatagaatt 5608079  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2113985 - 2113931
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  2113985 atgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttct 2113931  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48653814 - 48653760
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    ||||||||||||||| || ||||||||||||| ||| ||||||||| ||||||||    
T  48653814 atgtctttcttcttgcatgttttgttgcaaaagattcattcataattaagattct 48653760  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 4596445 - 4596491
Alignment:
Q  4 tctttcttcttgtattttttgttgcaaaaaattaattcataatcaag 50  Q
    |||||||| ||| |||||||||||||||| ||| |||||||||||||    
T  4596445 tctttctttttgcattttttgttgcaaaagattcattcataatcaag 4596491  T

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Target: scaffold0777 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5991 - 5937
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattct 55  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||| |||||    
T  5991 atgtctttcttcatgtattttttattgcaaaaaattcattcataatcaaaattct 5937  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 13431656 - 13431734
Alignment:
Q  10 ttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaaa 91  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| |||   || | ||||||||||||| |||||||| ||||||    
T  13431656 ttcttgtattttttgttgctaaagattcattcataatcaaggttc---tccacaaatatattttcaatagaattattcaaaa 13431734  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33480474 - 33480519
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataat 46  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||    
T  33480474 atgtctttcttcttgtattttttattgcagaagattaattcataat 33480519  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36066257 - 36066178
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaatta 84  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||   |||| ||||||||||||| || |||||    
T  36066257 atgtctttcttcttgtat-ttttgttgtaaaagatttattcataatcaaaattc---tctaaaaatatattttcaatacaatta 36066178  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3193505 - 3193553
Alignment:
Q  1 atgtctttcttcttgtattttttgttgcaaaaaattaattcataatcaa 49  Q
    ||||||||||||||| ||||||| |||||||| ||| ||||||||||||    
T  3193505 atgtctttcttcttgcattttttattgcaaaagattcattcataatcaa 3193553  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 502941 - 502862
Alignment:
Q  8 tcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaa 90  Q
    ||||||| | |||||| |||||||| ||| ||||||||||||  |||   |||| ||||||||||||| |||||||| |||||    
T  502941 tcttcttttttttttttttgcaaaagattcattcataatcaaagttc---tctaaaaatatattttcaatagaattaatcaaa 502862  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 168672 - 168748
Alignment:
Q  4 tctttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaatta 84  Q
    |||||||| ||| |||||||||| ||||| ||| ||||||||||||| |||   |||| ||||||||||||| ||||||||    
T  168672 tctttcttgttgcattttttgttacaaaagattcattcataatcaaggttc---tcta-aaatatattttcaatagaatta 168748  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 47000854 - 47000934
Alignment:
Q  6 tttcttcttgtattttttgttgcaaaaaattaattcataatcaagattctaatctagaaatatattttcagtagaattactcaaa 90  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||||| |||   ||||| |||||| |||||| |||||||| |||||    
T  47000854 tttcttcttatattttttgttgcaaaatattcatttataatcaaaatt---atctaaaaatat-ttttcaatagaattaatcaaa 47000934  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 29062354 - 29062394
Alignment:
Q  6 tttcttcttgtattttttgttgcaaaaaattaattcataat 46  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  29062354 tttcttcttgtattttttgttgcaaaagatttatttataat 29062394  T

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