View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_2 (Length: 552)
Name: NF9298_low_2
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 2218226 - 2217692
Alignment:
| Q |
1 |
aggtgctacattatttatggatgttcattttatatctttggacttttaacggagactaggccatgatttgatttcttcttttacattgaattctcagttt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2218226 |
aggtgctacattatttatggttgttcattttatatctttggacttttaacggagactaggccatgatttgatttcttcttttacattgaattctcagttt |
2218127 |
T |
|
| Q |
101 |
aaaagtaattaactaatttatgatttataatatcaatggttgatttgttcatccttaaattgtaaaatgaattgctcacttttgaggagacaaatccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2218126 |
aaaagtaattaactaatttatgatttataatatcaatggttgatttgttcatccttaagttgtaaaatgaattgctcacttttgaggagacaaatccctt |
2218027 |
T |
|
| Q |
201 |
attttgcatatgttctctgtggtcatgggccttgtctaagtttttgaaataaagatcttaattttcatattctcaattctgttctcttcatcatgtttat |
300 |
Q |
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| T |
2218026 |
attttgcatatgttctctgtggtcatgggccttgtctaagtttttgaaataaagatcttaattttcatattctcaattctgttctcttcatcatgtttat |
2217927 |
T |
|
| Q |
301 |
tgttttacctttttccgaaaaaagaaaatgcgcaagtggccttggcggatattagaagggatatagggtggccatagccctcccaaaattactatttccc |
400 |
Q |
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| T |
2217926 |
tgttttacctttttccgaaaaaagaaaatgcacaagtggccttggcggatattagaagggatatagggtggccatagccctcccaaaattactatttccc |
2217827 |
T |
|
| Q |
401 |
ttcttaataggtgtatatatattcagtaatgctaaatgacgcggaaaattacccccacgaatgcgctaaaccaaatggtctgtcttttataataatattt |
500 |
Q |
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| T |
2217826 |
ttcttaataggtgtatatatattcagtaatgctaaatgacgcggcaaattacccccacgaatgcgctaaaccaaatggtctgtcttttataataatattt |
2217727 |
T |
|
| Q |
501 |
gatgaataatttctttagtttgtgaatacccttac |
535 |
Q |
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| T |
2217726 |
gatgaataatttctttagtttgtgaatacccttac |
2217692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 2225515 - 2225423
Alignment:
| Q |
335 |
agtggccttggcggatattagaagggatatagggtggccatag----ccctcccaaaattactatttcccttcttaataggtgtatatatatt |
423 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||| | |||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
2225515 |
agtggccgtggtggatagtagaagggatagagggtggccatgggccaccctcctaaaattattatttcccttcttaataggtgtatatgtatt |
2225423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 2225654 - 2225586
Alignment:
| Q |
2 |
ggtgctacattatttatggatgttcattttatatctttggacttttaacggagactaggccatgatttg |
70 |
Q |
| |
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| T |
2225654 |
ggtgctacattgtttatagctgtttatgttatttatttggacttttaatagagactaggccttgatttg |
2225586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 26157700 - 26157651
Alignment:
| Q |
483 |
tcttttataataatatttgatgaat-aatttctttagtttgtgaataccc |
531 |
Q |
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| T |
26157700 |
tcttttataataatatttgatgaataaatttctttagtttgtgaataccc |
26157651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 35653587 - 35653539
Alignment:
| Q |
483 |
tcttttataataatatttgatgaataatttctttagtttgtgaataccc |
531 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
35653587 |
tcttttataataatatttgatgaataaattttttagtttgtgaataccc |
35653539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 32827937 - 32827986
Alignment:
| Q |
424 |
cagtaatgctaaatgacgcggaaaattacccccacgaatgcgctaaacca |
473 |
Q |
| |
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|||| |||||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
32827937 |
cagtgatgctaaatggtgcgaaaaattacccccacgaatgcactaaacca |
32827986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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