View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_4 (Length: 477)
Name: NF9298_low_4
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 37090511 - 37090960
Alignment:
| Q |
11 |
gatggacatcaatgtgccaagattgcacactgtcttcaggattttcaaatacaatctcgacatagcctcgaaaatcagcggccataacagaagtttggag |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090511 |
gatggccatcaatgtgccaagattgcacactgtcttcaggattttcaaatacaatctcgacatagcctcgaaaatcagcggccataacagaagtttggag |
37090610 |
T |
|
| Q |
111 |
gtaaccaccaccacctgtgggattgtccggaatacttccaaggctgaaaactcccgagatcttgaagtaatccgccagtttaagtggtgtatcggcaggg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090611 |
gtaaccaccaccacctgtgggattgtccggaatacttccaaggctgaaaactcccgagatcttgaagtaatccgccagtttaagtggtgtatcggcaggg |
37090710 |
T |
|
| Q |
211 |
atgaacgaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgttgtgtttatcaaaccataat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37090711 |
atgaacgaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgtcgtgtttatcaaaccataat |
37090810 |
T |
|
| Q |
311 |
ggtaagatccttgcggattaggtcttggtccactagccgtaagattcctcctgagtaatgaa-nnnnnnnatagtacatcactcaaggatcacgtaaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37090811 |
ggtaagatccttgcggattaggtcttggtccactagccgtaagattcctcctgagtaatgaattttttttatagtacatcactcaaggatcacgtaaaca |
37090910 |
T |
|
| Q |
410 |
agtttgtaacagtaaatggactaagaatgaatgagaacaatacctgaggg |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090911 |
agtttgtaacagtaaatggactaagaatgaatgagaacaatacctgaggg |
37090960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 17348542 - 17348196
Alignment:
| Q |
17 |
catcaatgtgccaagattgcacactgtcttcaggattttcaaatacaatctcgacatagcctcgaaaatcagcggccataacagaagtttggaggtaacc |
116 |
Q |
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||||||||||||| ||||||| | ||||||||||||| ||||| |||| ||| ||| | ||||||||||| || ||||| |||||||| || || ||||| |
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| T |
17348542 |
catcaatgtgccatgattgcaaagtgtcttcaggattctcaaacacaacctccacaaaacctcgaaaatcggctgccatgacagaagtctgaagataacc |
17348443 |
T |
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| Q |
117 |
accaccacctgtgggattgtccggaatacttccaaggctgaaaactcccga--gatcttgaagtaatccgccagtttaagtggtgtatcggcagggatga |
214 |
Q |
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|||||| || |||||||||||||| ||||||||||| ||||||| ||| ||| ||||||| ||| || ||||| ||||||||||| ||||| || | |
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| T |
17348442 |
accacctccggtgggattgtccgggatacttccaag--tgaaaacaccccttggatgttgaagtgatcagctagtttgagtggtgtatcagcaggaataa |
17348345 |
T |
|
| Q |
215 |
acgaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgttgtgtttatcaaaccataatggta |
314 |
Q |
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| T |
17348344 |
atgacacaccgttgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggta |
17348245 |
T |
|
| Q |
315 |
agatccttgcggattaggtcttggtccactagccgtaagattcctcctg |
363 |
Q |
| |
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|||||||| ||||| |||||||||||||| || ||||||||||||||| |
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| T |
17348244 |
ggatccttgtggatttggtcttggtccacttgctgtaagattcctcctg |
17348196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 17135329 - 17135675
Alignment:
| Q |
17 |
catcaatgtgccaagattgcacactgtcttcaggattttcaaatacaatctcgacatagcctcgaaaatcagcggccataacagaagtttggaggtaacc |
116 |
Q |
| |
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|||| |||||||| ||||||| | | ||||||||||| ||||| |||| ||| | | | ||||||||||| || ||||| |||||||| || || | ||| |
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| T |
17135329 |
catcgatgtgccatgattgcaaagtatcttcaggattctcaaacacaacctccagaaaacctcgaaaatcggccgccatgacagaagtctgaagattacc |
17135428 |
T |
|
| Q |
117 |
accaccacctgtgggattgtccggaatacttccaaggctgaaaactcccgagatcttgaagtaatccgccagtttaagtggtgtatcggcagggatgaac |
216 |
Q |
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| T |
17135429 |
gccaccaccggtggggttgtccgggatacttccaagtgaaaacacaccttggatcttgaagtaatcagctagtttgagtggtgtatcagcagggataaat |
17135528 |
T |
|
| Q |
217 |
gaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgttgtgtttatcaaaccataatggtaag |
316 |
Q |
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|| |||||||| |||||||||||||| || || ||||||| ||| ||||| |||| |||||| |||||||| ||||||||||||| ||||||||||| | |
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| T |
17135529 |
gacacactattgacagcatatctttgttttcctttgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggtagg |
17135628 |
T |
|
| Q |
317 |
atccttgcggattaggtcttggtccactagccgtaagattcctcctg |
363 |
Q |
| |
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||||||| ||||| |||||||||||||| || ||||||||||||||| |
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| T |
17135629 |
atccttgtggatttggtcttggtccacttgctgtaagattcctcctg |
17135675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 28939685 - 28939748
Alignment:
| Q |
293 |
tgtttatcaaaccataatggtaagatccttgcggattaggtcttggtccactagccgtaagatt |
356 |
Q |
| |
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||||||||| |||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| |
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| T |
28939685 |
tgtttatcataccatagtggtatgatccttgtggattaggccttggtccacttgcagtaagatt |
28939748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 8571006 - 8571062
Alignment:
| Q |
294 |
gtttatcaaaccataatggtaagatccttgcggattaggtcttggtccactagccgt |
350 |
Q |
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|||||||| || |||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
8571006 |
gtttatcatgccgtaatggtatgatccttgcggatttggtcttggtccacttgccgt |
8571062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 53749611 - 53749675
Alignment:
| Q |
289 |
gttgtgtttatcaaaccataatggtaagatccttgcggattaggtcttggtccactagccgtaag |
353 |
Q |
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||||||||||| | ||| |||||||| |||||||| || ||||| ||||||||||| || ||||| |
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| T |
53749611 |
gttgtgtttatgagaccgtaatggtaggatccttgtgggttaggccttggtccacttgctgtaag |
53749675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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