View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_5 (Length: 450)
Name: NF9298_low_5
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 32653208 - 32652776
Alignment:
| Q |
1 |
acaaacccaagaatatgagtcatatccatcatnnnnnnngcacctacttcatctgctatctttccttgcataaaagatgcaattagtttatcgcaaggaa |
100 |
Q |
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| T |
32653208 |
acaaacccaagaatatgagtcatatccatcataaaaaaagcacctacttcatctgctatctttccttgcataaaagatgcaattagtttatcgcaaggaa |
32653109 |
T |
|
| Q |
101 |
taaaatcacattgtatatagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataatcgacgtctggaggatacacactaacagca |
200 |
Q |
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| T |
32653108 |
taaaatcacattgtatacagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataattgacgtctggaggatacacactagcaaca |
32653009 |
T |
|
| Q |
201 |
atgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttattccacaaataagccaatatatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32653008 |
atgagctttggtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttattccacaaataagccaatatatc |
32652909 |
T |
|
| Q |
301 |
taaaaacaattttaatgaaaatacaaacacctgttgattcatcaagttggtacggcataatttcaaaatattgcgaggcgaaattatgagataaatgtcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32652908 |
taaaaacaattttaatgaaaatacaaacacctgttgattcatcaagtcggtacggcataatttcaaaatattgcgaggcgaaattatgagataaatgtcc |
32652809 |
T |
|
| Q |
401 |
cttgtgagtcaaattcaaatactggtaacatat |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32652808 |
cttgtgagtcaaattcaaatactggtaacatat |
32652776 |
T |
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