View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_7 (Length: 413)
Name: NF9298_low_7
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 52412954 - 52412555
Alignment:
| Q |
1 |
atgctttattcgtattaatttttgttcggtgttttatcattgtgtggaagctgaaagaggaactcatgcctgatgtttagaatttgaagaggaggtccaa |
100 |
Q |
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| T |
52412954 |
atgctttattcgtattaatttttgtttggtgttttatcattgtgtggaagctgaaagaggaactcatgcctgatgtttagaatttgaagaggaggtccaa |
52412855 |
T |
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| Q |
101 |
atccaataaaacttgtataaaacttatatgtctatcctaacgttgaattatgagcatgttgcagtttagttatggattggaaatgtaataaaattaggca |
200 |
Q |
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| T |
52412854 |
acccaataaaacttgtataaaacttatatgtctatcctaacgttgaattatgagcatgttgcagtttagttatggattggaaatgtaataaaattaggca |
52412755 |
T |
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| Q |
201 |
ctataactagaatttaaaaatttagttttgcctcatgtatattcttgtcttcactgagattatttattaggcactataactagaattcaagagttttgcc |
300 |
Q |
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| T |
52412754 |
ctataactagaatttaaaaatttagttttgcctcatgtatattcttgtcttcactgagattatttattaggcactataactagaattcaagagttttgcc |
52412655 |
T |
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| Q |
301 |
tcatgtatattattgtcttcactaagattgtttttgaattcgattttatgaaacaaggccttctgatttcagatgggagaaacaagttgagggtagattc |
400 |
Q |
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| T |
52412654 |
tcatgtatattattgtcttcactaagattgtttttgaattcaattttatgaaacaaggccttctgatttcagatgggagaaacaagttgagggtagattc |
52412555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 6741914 - 6741981
Alignment:
| Q |
126 |
atatgtctatcctaacgttgaattatgagcatgttgcagtttagttatggattggaaatgtaataaaa |
193 |
Q |
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| T |
6741914 |
atatgtctattctaaggttgttttaggagcatgttacagtttagttattgattagagatgtaataaaa |
6741981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 7772615 - 7772683
Alignment:
| Q |
193 |
attaggcactataactagaatttaaaaatttagttttgcctcatgtatattcttgtcttcactgagatt |
261 |
Q |
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| T |
7772615 |
attaggcactataactagaattcaaaaatttagttttgcctcatgtatattattgtcttcactgagatt |
7772683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 7772612 - 7772695
Alignment:
| Q |
263 |
tttattaggcactataactagaattcaaga-----gttttgcctcatgtatattattgtcttcactaagattgtttttgaattc |
341 |
Q |
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| T |
7772612 |
tttattaggcactataactagaattcaaaaatttagttttgcctcatgtatattattgtcttcactgagattgtttttgaattc |
7772695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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