View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9298_low_9 (Length: 383)
Name: NF9298_low_9
Description: NF9298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9298_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 25226628 - 25226265
Alignment:
| Q |
1 |
ctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttga |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25226628 |
ctaataagtaatctcgcatggatgtacacgcacgcacacgatacttttcatttgtatctacacaacaaaattgcatcagtatactcactctaaaatttga |
25226529 |
T |
|
| Q |
101 |
aaagaaaaataatgcttgta-gtaaaaacaatgaagtcggacacaaattttacagaagttaaactaattttca--gagttcctaattgtgactgcagacc |
197 |
Q |
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|||||||||||||||||| | ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25226528 |
aaagaaaaataatgcttgcaagtaaaaacaatgaagtcagacaaaacttttacagaagttaaactaattttcaccgagttcctaattgtgactgcagacc |
25226429 |
T |
|
| Q |
198 |
aattttgcacagatatgccaatgaagatacctcacttggtgcttggctcattggacctattatggtaatgaggcaacgagtcagcaccttttgaactacc |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || | ||| || |
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| T |
25226428 |
aatattgcacagatatgccaatgaagatacctcacttggtgcttggctcattggacctattatggttatgaagcaacgagtcagcaccgttaggactgcc |
25226329 |
T |
|
| Q |
298 |
aaggtttggctatgtgtcaggcaaagtaccactcgaccctggcattgaatgtggaatttgttgg |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
25226328 |
aaggtttggctatgtgtcaggcaaagtaccactcgtccctggcattgaatatggaatttgttgg |
25226265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 25290784 - 25290421
Alignment:
| Q |
1 |
ctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttga |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25290784 |
ctaataagtaatctcgcatggatgtacacgcacgcacacgatacttttcatttgtatctacacaacaaaattgcatcagtatactcactctaaaatttga |
25290685 |
T |
|
| Q |
101 |
aaagaaaaataatgcttgta-gtaaaaacaatgaagtcggacacaaattttacagaagttaaactaattttca--gagttcctaattgtgactgcagacc |
197 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25290684 |
aaagaaaaataatgcttgcaagtaaaaacaatgaagtcagacaaaacttttacagaagttaaactaattttcaccgagttcctaattgtgactgcagacc |
25290585 |
T |
|
| Q |
198 |
aattttgcacagatatgccaatgaagatacctcacttggtgcttggctcattggacctattatggtaatgaggcaacgagtcagcaccttttgaactacc |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || | ||| || |
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| T |
25290584 |
aatattgcacagatatgccaatgaagatacctcacttggtgcttggctcattggacctattatggttatgaagcaacgagtcagcaccgttaggactgcc |
25290485 |
T |
|
| Q |
298 |
aaggtttggctatgtgtcaggcaaagtaccactcgaccctggcattgaatgtggaatttgttgg |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
25290484 |
aaggtttggctatgtgtcaggcaaagtaccactcgtccctggcattgaatatggaatttgttgg |
25290421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 25726541 - 25726904
Alignment:
| Q |
1 |
ctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25726541 |
ctaataagtaatctcgtatggatgtacacgcacgcacacgacacttttcatttgtatctacacaacagaattgcatcagtatactcactctaaaatttca |
25726640 |
T |
|
| Q |
101 |
aaagaaaaataatgcttgta-gtaaaaacaatgaagtcggacacaaattttacagaagttaaactaattttca--gagttcctaattgtgactgcagacc |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |
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| T |
25726641 |
aaagaaaaataatgcttgtaagtaaaaacaatgaagtcagacacaacttttacagaagttaaactaattttcactgagctcctaattgtgactgcatacc |
25726740 |
T |
|
| Q |
198 |
aattttgcacagatatgccaatgaagatacctcacttggtgcttggctcattggacctattatggtaatgaggcaacgagtcagcaccttttgaactacc |
297 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||| || |
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| T |
25726741 |
aatattgcacggatatgccgatgaagatacctcacttggtgcttggctcattggacctattatggttatgaagaaacgagtcagcacctttaagactgcc |
25726840 |
T |
|
| Q |
298 |
aaggtttggctatgtgtcaggcaaagtaccactcgaccctggcattgaatgtggaatttgttgg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25726841 |
aaggtttggctatgtgtcaggcaaagtaccactcgaccctgccattgaatgtggaatttgttgg |
25726904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 25220624 - 25220832
Alignment:
| Q |
6 |
aagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttgaaaaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| | ||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25220624 |
aagtaatctcgtatggatgtacacgcacacacccgaaa-tttgcatttctatctacacaacagaattgcatcagtatactcactctaaattttgaaaaga |
25220722 |
T |
|
| Q |
106 |
aaaataatgcttgt-agtaaaaacaatgaagtcggacacaaattttacagaagttaaactaattttca--gagttcctaattgtgactgcagaccaattt |
202 |
Q |
| |
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|||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
25220723 |
aaaataatgcttgtaagtgaaaacaatgaagtcagacacaacttttacagaagttaaactaattttcactgagtttctaattgtgactgcagaccaatat |
25220822 |
T |
|
| Q |
203 |
tgcacagata |
212 |
Q |
| |
|
|||||||||| |
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| T |
25220823 |
tgcacagata |
25220832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 25284779 - 25284987
Alignment:
| Q |
6 |
aagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttgaaaaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| | ||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25284779 |
aagtaatctcgtatggatgtacacgcacacacccgaaa-tttgcatttctatctacacaacagaattgcatcagtatactcactctaaattttgaaaaga |
25284877 |
T |
|
| Q |
106 |
aaaataatgcttgt-agtaaaaacaatgaagtcggacacaaattttacagaagttaaactaattttca--gagttcctaattgtgactgcagaccaattt |
202 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
25284878 |
aaaataatgcttgtaagtgaaaacaatgaagtcagacacaacttttacagaagttaaactaattttcactgagtttctaattgtgactgcagaccaatat |
25284977 |
T |
|
| Q |
203 |
tgcacagata |
212 |
Q |
| |
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|||||||||| |
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| T |
25284978 |
tgcacagata |
25284987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 14397074 - 14397119
Alignment:
| Q |
43 |
acttttcatttgtaactacacaacagaattgcatcagtatactcac |
88 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
14397074 |
acttttcatttgtatctacacaacagaactgcatcagtatactcac |
14397119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 25092249 - 25092170
Alignment:
| Q |
174 |
agttcctaattgtgactgcagaccaa--ttttgcacagatatgccaatgaagatacctcacttggtgcttggctcattgg |
251 |
Q |
| |
|
||||||||||||||| |||||| ||| | ||||||||||||| ||| ||||||| |||||||||||| ||| ||||||| |
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| T |
25092249 |
agttcctaattgtgagtgcagaacaaaatattgcacagatatgtcaaggaagatatctcacttggtgcatggttcattgg |
25092170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 25150219 - 25150140
Alignment:
| Q |
174 |
agttcctaattgtgactgcagaccaa--ttttgcacagatatgccaatgaagatacctcacttggtgcttggctcattgg |
251 |
Q |
| |
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||||||||||||||| |||||| ||| | ||||||||||||| ||| ||||||| |||||||||||| ||| ||||||| |
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| T |
25150219 |
agttcctaattgtgagtgcagaacaaaatattgcacagatatgtcaaggaagatatctcacttggtgcatggttcattgg |
25150140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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