View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_high_6 (Length: 398)
Name: NF9299_high_6
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 24777361 - 24777001
Alignment:
| Q |
18 |
aagcttcacccttacggcagtctcctccactccgtattcgacattatcatgtccggggccaagaaaaaccaacctcctctcaagaaaaccaaaactcatc |
117 |
Q |
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| T |
24777361 |
aagcttcacccctacggcagcctcctccactccgtattcgacgttatcatgtccggcgccaagaaaaaccaacctcctctcaagaaaaccaaaactcatc |
24777262 |
T |
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| Q |
118 |
actttcaatccactccctccaaaagcatacgtacattctttcaaccactcaacaaccctattcctcccaaaaaccctgatactgaatctcctatcaagct |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777261 |
accttcaatccactccctccaaaagcatacgtacattctttcaaccactcaacagccctattcctcccaaaaaccctgatactgaatctcctatcaagct |
24777162 |
T |
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| Q |
218 |
tcctcaccaaacatcaacttcttcgacttcttctccatcttcttcgtcctcttccaccaatgttgttgaaatgaagaaacggatttcacttttgaagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24777161 |
tcctcaccaaacatcaacttcttcgacttcttctccatcttcttcgtcctcttccaccaatgttgttgaagtgaagaaacggatttcacttttgaagaag |
24777062 |
T |
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| Q |
318 |
acaccgtcggagtttgatcctagttcaattgcatggtggaagaagggtgatccggtgccgt |
378 |
Q |
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||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |
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| T |
24777061 |
acaccgtcggagtttgatcatagctcggttgcatggtggaagaagggtgaaccggtgccgt |
24777001 |
T |
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