View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9299_high_7 (Length: 326)

Name: NF9299_high_7
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9299_high_7
NF9299_high_7
[»] chr7 (4 HSPs)
chr7 (16-317)||(39984569-39984870)
chr7 (40-290)||(8018384-8018634)
chr7 (40-185)||(8101614-8101759)
chr7 (208-318)||(8101782-8101892)
[»] chr2 (3 HSPs)
chr2 (23-317)||(17649261-17649544)
chr2 (23-277)||(17706664-17706911)
chr2 (254-296)||(17722080-17722122)
[»] chr4 (3 HSPs)
chr4 (41-311)||(23588683-23588953)
chr4 (41-311)||(23597535-23597805)
chr4 (206-317)||(54395536-54395647)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 39984569 - 39984870
Alignment:
Q  16 gcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctg 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |    
T  39984569 gcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcag 39984668  T
Q  116 cctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtc 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||    
T  39984669 cctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagctttcctgcaattttttc 39984768  T
Q  216 atccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctct 315  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  39984769 atccttaatggtgttcctcatgttgtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatcttccgacttgtacttctct 39984868  T
Q  316 gc 317  Q
    ||    
T  39984869 gc 39984870  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 8018634 - 8018384
Alignment:
Q  40 ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta 139  Q
    |||||||| ||||||||||||||||| |||||||| |  || || | |||||||||||| || ||||||||||| |||||||| | |||||||   || |    
T  8018634 ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca 8018535  T
Q  140 gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt 239  Q
     |||||| || ||||| ||||| |  || ||||||||||| ||||| || |    |||||||    ||||||| || || ||||||||||||||||||||    
T  8018534 accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt 8018435  T
Q  240 gtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttc 290  Q
    ||| || || |||||||| |||||||| || || |||||||| || |||||    
T  8018434 gtaagcgtagttttccaaagcattctttgcatcaaccttctttttgtgttc 8018384  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 8101614 - 8101759
Alignment:
Q  40 ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta 139  Q
    ||||||||||||||||| |||||||| ||||| ||||   | || |  |||||||||||||| ||||||||||| || || ||||||||||| ||||| |    
T  8101614 ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa 8101713  T
Q  140 gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtc 185  Q
    |||| || || ||  ||||||| |  |||||||||| |||||||||    
T  8101714 gccattgaatggctccctcaattgcatcctcaatctgcttcttgtc 8101759  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 8101782 - 8101892
Alignment:
Q  208 atcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgt 307  Q
    ||||| || || ||||| ||||| ||||||||||||||||| || ||||| |  ||||| ||||| ||||||||||| || || ||||| ||   |||||    
T  8101782 atcttctcgtctttaatggtgtttctcatgttgtatgcatagttctccaaggagttctttgcctcaaccttcttcttgtgctcctcatcttcactcttgt 8101881  T
Q  308 acttctctgct 318  Q
    | |||||||||    
T  8101882 atttctctgct 8101892  T

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Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 17649544 - 17649261
Alignment:
Q  23 ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |  |  |||||||||||| ||||||||||||||||||| | |    
T  17649544 ccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatcttatcctcaaactcatctgcctattc 17649445  T
Q  123 aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta 222  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||   |||||||||| | |||||||||||||| ||||||||| ||||| |||    
T  17649444 aagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagctttcatgcaatcttttcatcatta 17649349  T
Q  223 attgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtacttctctgc 317  Q
    || ||||||||||||||||    ||| |||||||||||||||||| |||  ||   || |||||| |||||||| || |||||||||||||||||    
T  17649348 atggtgttcctcatgttgt----atagttttccaatgcattcttgtccttaac---ctacttatgctcttcatcttccgacttgtacttctctgc 17649261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 17706911 - 17706664
Alignment:
Q  23 ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc 122  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||    
T  17706911 ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc 17706812  T
Q  123 aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta 222  Q
    |||||| || || ||||||||| |||||| ||||||||||||||||||||   | |||||||| | |||||||||||||||||||||||| |||||||||    
T  17706811 aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaa---ttttcttgtctttggaatcaagctttcctgcaatcttttcatcctta 17706715  T
Q  223 attgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgacct 277  Q
    || |||| |||| ||||||    ||| |||||||  |||||||||||||| ||||    
T  17706714 atggtgtccctcgtgttgt----atagttttccatagcattcttggcctcaacct 17706664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 17722122 - 17722080
Alignment:
Q  254 ccaatgcattcttggcctcgaccttcttcttatgttcttcatc 296  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||    
T  17722122 ccaatgcattcttggcctcaacctccttcttatgctcttcatc 17722080  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 311
Target Start/End: Complemental strand, 23588953 - 23588683
Alignment:
Q  41 caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag 140  Q
    ||||||| |||||| | ||||||||||||||||| |  |  ||||  |||||||||||||||||||| ||||| |||||| |||| || ||  |||| |     
T  23588953 caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa 23588854  T
Q  141 ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg 240  Q
    ||| || |||||  ||||||| |  || ||||| |||||||| ||||| | |   | |||    ||||||||||| || || ||||||||||||||||||    
T  23588853 ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg 23588754  T
Q  241 tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtactt 311  Q
    || ||||| || || | ||||||||||||||| || ||||| || || || || ||||| |||||||||||    
T  23588753 taggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtactt 23588683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 311
Target Start/End: Complemental strand, 23597805 - 23597535
Alignment:
Q  41 caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag 140  Q
    ||||||| |||||| | ||||||||||||||||| | ||  ||||  |||||||||||||||||||| ||||| |||||| |||| || ||  |||| |     
T  23597805 caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa 23597706  T
Q  141 ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg 240  Q
    ||| || |||||  ||||||| |  || ||||| |||||||| ||||| |     | |||    ||||||||||| || || ||||||||||||||||||    
T  23597705 ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagccgacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg 23597606  T
Q  241 tatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggacttgtactt 311  Q
    || ||||| || || |  ||||| |||||||| |||||| | || || || ||||||||||| ||||||||    
T  23597605 taggcatagttctcaagcgcatttttggcctccaccttccttttgtgctcctcatcctcggatttgtactt 23597535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 54395536 - 54395647
Alignment:
Q  206 caatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattcttggcctcgaccttcttcttatgttcttcatcctcggactt 305  Q
    ||||||| |||||||||||||| |||||||| || || |||||||| || | || |||||| ||||| || ||||||||    ||||||||||| | |||    
T  54395536 caatcttctcatccttaattgtattcctcatattataagcataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgcctt 54395635  T
Q  306 gtacttctctgc 317  Q
     |||||||||||    
T  54395636 atacttctctgc 54395647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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